Package: discosnp (4.4.4-1)
Links for discosnp
Debian Resources:
Download Source Package discosnp:
Maintainers:
External Resources:
- Homepage [colibread.inria.fr]
Similar packages:
discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).
Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.
The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:
1) its mean read coverage 2) the (phred) quality of reads generating the polymorphism.
This program is superseded by DiscoSnp++.
Other Packages Related to discosnp
|
|
|
|
-
- dep: gatb-core
- Genome Analysis Toolbox with de-Bruijn graph
-
- dep: libc6 (>= 2.29)
- GNU Biblioteca C: Bibliotecas compartilhadas
also a virtual package provided by libc6-udeb
-
- dep: libgatbcore3 (>= 1.4.2+dfsg)
- dynamic library of the Genome Analysis Toolbox
-
- dep: libgcc-s1 (>= 3.0) [not i386]
- Biblioteca de suporte GCC
- dep: libgcc-s1 (>= 4.2) [i386]
-
- dep: libhdf5-103-1
- HDF5 C runtime files - serial version
-
- dep: libstdc++6 (>= 9)
- Biblioteca C++ padrão da GNU v3
-
- dep: python3
- linguagem orientada a objetos de alto nível e interativa (versão padrão da python3)
-
- dep: zlib1g (>= 1:1.2.6)
- biblioteca de compressão - runtime (tempo de execução)
Download discosnp
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
amd64 | 1,132.4 kB | 2,560.0 kB | [list of files] |
arm64 | 1,116.6 kB | 2,532.0 kB | [list of files] |
i386 | 1,136.4 kB | 2,455.0 kB | [list of files] |
mips64el | 1,112.4 kB | 2,686.0 kB | [list of files] |
ppc64el | 1,136.6 kB | 2,840.0 kB | [list of files] |
s390x | 1,112.2 kB | 2,572.0 kB | [list of files] |