Pakiet: kallisto (0.48.0+dfsg-4 i inne) [debports]
Odnośniki dla kallisto
Zasoby systemu Debian:
Pobieranie pakietu źródłowego :
Nie znalezionoOpiekunowie:
Zasoby zewnętrzne:
- Strona internetowa [pachterlab.github.io]
Podobne pakiety:
near-optimal RNA-Seq quantification
Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.
Inne pakiety związane z kallisto
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- dep: libc6 (>= 2.38)
- Biblioteka GNU C: biblioteki współdzielone
również pakiet wirtualny udostępniany przez libc6-udeb
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- dep: libgcc-s1 (>= 3.4)
- Biblioteka wspomagająca GCC
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- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 13.1)
- Standardowa biblioteka GNU C++, wersja 3
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- dep: zlib1g (>= 1:1.1.4)
- Biblioteka kompresyjna - pliki wykonawcze
Pobieranie kallisto
| Architektura | Wersja | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|---|
| sparc64 (port nieoficjalny) | 0.48.0+dfsg-4+b1 | 229,7 KiB | 1 050,0 KiB | [lista plików] |