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/usr/bin/bamleftalign
/usr/bin/freebayes
/usr/share/doc/freebayes/README.md.gz
/usr/share/doc/freebayes/README.test
/usr/share/doc/freebayes/README.test_data
/usr/share/doc/freebayes/RELEASE-NOTES.md
/usr/share/doc/freebayes/changelog.Debian.gz
/usr/share/doc/freebayes/copyright
/usr/share/doc/freebayes/examples/README.test_data
/usr/share/doc/freebayes/examples/data/targets.bed
/usr/share/doc/freebayes/examples/data/test.alt
/usr/share/doc/freebayes/examples/data/test.bam
/usr/share/doc/freebayes/examples/data/test.bam.bai
/usr/share/doc/freebayes/examples/data/test.bed
/usr/share/doc/freebayes/examples/data/test.ref
/usr/share/doc/freebayes/examples/data/test.ref.fai
/usr/share/doc/freebayes/examples/data/test.vcf
/usr/share/doc/freebayes/examples/freebayes-env.yaml
/usr/share/doc/freebayes/examples/performance/benchmark.md
/usr/share/doc/freebayes/examples/pipeline.sh
/usr/share/doc/freebayes/examples/regression/NA12878.chr22.tiny.vcf
/usr/share/doc/freebayes/examples/regression/README.md
/usr/share/doc/freebayes/examples/runner.sh
/usr/share/doc/freebayes/examples/snakemake-freebayes-parallel.smk
/usr/share/doc/freebayes/examples/splice/1:883884-887618.bam
/usr/share/doc/freebayes/examples/splice/1:883884-887618.bam.bai
/usr/share/doc/freebayes/examples/splice/1:883884-887618.fa
/usr/share/doc/freebayes/examples/splice/1:883884-887618.fa.fai
/usr/share/doc/freebayes/examples/t/00_region_and_target_handling.t
/usr/share/doc/freebayes/examples/t/01_call_variants.t
/usr/share/doc/freebayes/examples/t/01b_call_variants.t
/usr/share/doc/freebayes/examples/t/02_multi_bam.t
/usr/share/doc/freebayes/examples/t/03_reference_bases.t
/usr/share/doc/freebayes/examples/targets.bed
/usr/share/doc/freebayes/examples/test.alt
/usr/share/doc/freebayes/examples/test.bam
/usr/share/doc/freebayes/examples/test.bam.bai
/usr/share/doc/freebayes/examples/test.bed
/usr/share/doc/freebayes/examples/test.ref
/usr/share/doc/freebayes/examples/test.ref.fai
/usr/share/doc/freebayes/examples/test.vcf
/usr/share/doc/freebayes/examples/tiny/1read.bam
/usr/share/doc/freebayes/examples/tiny/1read.bam.bai
/usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.bam
/usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.bam.bai
/usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.cram
/usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.giab.vcf
/usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.hla.bam
/usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.hla.bam.bai
/usr/share/doc/freebayes/examples/tiny/hla.fa
/usr/share/doc/freebayes/examples/tiny/hla.fa.fai
/usr/share/doc/freebayes/examples/tiny/hla.vcf.gz
/usr/share/doc/freebayes/examples/tiny/hla.vcf.gz.tbi
/usr/share/doc/freebayes/examples/tiny/q with spaces.fa
/usr/share/doc/freebayes/examples/tiny/q with spaces.fa.fai
/usr/share/doc/freebayes/examples/tiny/q with spaces.regions
/usr/share/doc/freebayes/examples/tiny/q.fa
/usr/share/doc/freebayes/examples/tiny/q.fa.fai
/usr/share/doc/freebayes/examples/tiny/q.regions
/usr/share/doc/freebayes/examples/tiny/q.vcf.gz
/usr/share/doc/freebayes/examples/tiny/q.vcf.gz.tbi
/usr/share/doc/freebayes/examples/tiny/q_spiked.vcf.gz
/usr/share/doc/freebayes/examples/tiny/q_spiked.vcf.gz.tbi
/usr/share/doc/freebayes/run-unit-test.gz
/usr/share/freebayes/scripts/GenerateFreebayesRegions.R
/usr/share/freebayes/scripts/bgziptabix
/usr/share/freebayes/scripts/coverage_to_regions.py
/usr/share/freebayes/scripts/fasta_generate_regions.py
/usr/share/freebayes/scripts/freebayes-parallel
/usr/share/freebayes/scripts/generate_freebayes_region_scripts.sh
/usr/share/freebayes/scripts/sam_add_rg.pl
/usr/share/freebayes/scripts/samples.cnv
/usr/share/freebayes/scripts/split_ref_by_bai_datasize.py
/usr/share/freebayes/scripts/update_version.sh
/usr/share/freebayes/scripts/vcffirstheader