Pakiet: mauve-aligner (2.4.0+4736-3)

Odnośniki dla mauve-aligner

Zasoby systemu Debian:

Pobieranie pakietu źródłowego mauve-aligner:

Opiekunowie:

Zasoby zewnętrzne:

Strona internetowa [darlinglab.org]

Podobne pakiety:

multiple genome alignment

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.

Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.

Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.

Mauve is developed at the University of Wisconsin.

Inne pakiety związane z mauve-aligner

wymaga

poleca

sugeruje

enhances

dep: java-wrappers

Nakładki na pliki wykonywalne Javy
dep: libbiojava-java

Java API to biological data and applications (default version)
dep: libbiojava1.7-java

Java API to biological data and applications (version 1.7)
dep: libcommons-cli-java

Command line arguments and options parsing library
dep: libdbus-java

simple interprocess messaging system (Java implementation)
dep: libunixsocket-java

Unix socket API and bindings for Java
dep: libzeus-jscl-java

Zeus Java Swing Components Library
dep: progressivemauve

multiple genome alignment algorithms

Pobieranie mauve-aligner

Pobierz dla wszystkich dostępnych architektur
Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	480,1 KiB	545,0 KiB	[lista plików]
arm64	480,1 KiB	545,0 KiB	[lista plików]
armel	480,1 KiB	545,0 KiB	[lista plików]
armhf	480,1 KiB	545,0 KiB	[lista plików]
i386	480,1 KiB	545,0 KiB	[lista plików]
mips64el	480,1 KiB	545,0 KiB	[lista plików]
mipsel	480,1 KiB	545,0 KiB	[lista plików]
ppc64el	480,1 KiB	545,0 KiB	[lista plików]
s390x	480,1 KiB	545,0 KiB	[lista plików]