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[ Pakiet źródłowy: pscan-tfbs  ]

Pakiet: pscan-tfbs (1.2.2-4)

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search for transcription factor binding sites

Pscan finds Over-represented Transcription Factor Binding Site Motifs in Sequences from Co-Regulated or Co-Expressed Genes.

Pscan is a software tool that scans a set of sequences (e.g. promoters) from co-regulated or co-expressed genes with motifs describing the binding specificity of known transcription factors and assesses which motifs are significantly over- or under-represented, providing thus hints on which transcription factors could be common regulators of the genes studied, together with the location of their candidate binding sites in the sequences. Pscan does not resort to comparisons with orthologous sequences and experimental results show that it compares favorably to other tools for the same task in terms of false positive predictions and computation time. The website is free and open to all users and there is no login requirement.

Inne pakiety związane z pscan-tfbs

  • wymaga
  • poleca
  • sugeruje
  • enhances

Pobieranie pscan-tfbs

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amd64 69,9 KiB188,0 KiB [lista plików]
arm64 62,9 KiB164,0 KiB [lista plików]
armel 60,0 KiB163,0 KiB [lista plików]
armhf 59,6 KiB123,0 KiB [lista plików]
i386 76,1 KiB203,0 KiB [lista plików]
mips64el 67,3 KiB197,0 KiB [lista plików]
mipsel 67,5 KiB196,0 KiB [lista plików]
ppc64el 71,3 KiB228,0 KiB [lista plików]
s390x 64,2 KiB188,0 KiB [lista plików]