Pakiet: r-bioc-variantannotation (1.36.0-1)

Odnośniki dla r-bioc-variantannotation

Zasoby systemu Debian:

Pobieranie pakietu źródłowego r-bioc-variantannotation:

Opiekunowie:

Zasoby zewnętrzne:

Strona internetowa [bioconductor.org]

Podobne pakiety:

BioConductor annotation of genetic variants

This BioConductor package provides R functions to annotate variants, compute amino acid coding changess and to predict coding outcomes.

Inne pakiety związane z r-bioc-variantannotation

wymaga

poleca

sugeruje

enhances

dep: libc6 (>= 2.15)

Biblioteka GNU C: biblioteki współdzielone
również pakiet wirtualny udostępniany przez libc6-udeb
dep: libcurl4 (>= 7.18.0)

Łatwa w użyciu biblioteka klienta do transferu adresów URL (wersja OpenSSL)
dep: r-api-4.0

pakiet wirtualny udostępniany przez r-base-core
dep: r-api-bioc-3.12

pakiet wirtualny udostępniany przez r-bioc-biocgenerics
dep: r-base-core (>= 4.0.3-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-annotationdbi (>= 1.27.9)

GNU R Annotation Database Interface for BioConductor
dep: r-bioc-biobase

base functions for Bioconductor
dep: r-bioc-biocgenerics (>= 0.15.3)

generic functions for Bioconductor
dep: r-bioc-biostrings (>= 2.57.2)

GNU R string objects representing biological sequences
dep: r-bioc-bsgenome (>= 1.47.3)

BioConductor infrastructure for Biostrings-based genome data packages
dep: r-bioc-genomeinfodb (>= 1.15.2)

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicfeatures (>= 1.31.3)

GNU R tools for making and manipulating transcript centric annotations
dep: r-bioc-genomicranges (>= 1.41.5)

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges (>= 2.23.9)

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-matrixgenerics

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
dep: r-bioc-rhtslib

HTSlib high-throughput sequencing library as GNU R package
dep: r-bioc-rsamtools (>= 1.99.0)

GNU R binary alignment (BAM), variant call (BCF), or tabix file import
dep: r-bioc-rtracklayer (>= 1.39.7)

GNU R interface to genome browsers and their annotation tracks
dep: r-bioc-s4vectors (>= 0.27.12)

BioConductor S4 implementation of vectors and lists
dep: r-bioc-summarizedexperiment (>= 1.19.5)

BioConductor assay container
dep: r-bioc-xvector (>= 0.29.2)

BioConductor representation and manpulation of external sequences
dep: r-bioc-zlibbioc

(Virtual) zlibbioc Bioconductor package
dep: r-cran-dbi

GNU R package providing a generic database interface

rec: r-bioc-snpstats

BioConductor SnpMatrix and XSnpMatrix classes and methods
rec: r-cran-runit

GNU R package providing unit testing framework

sug: r-bioc-annotationhub

GNU R client to access AnnotationHub resources
sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-cran-ggplot2

implementation of the Grammar of Graphics

Pobieranie r-bioc-variantannotation

Pobierz dla wszystkich dostępnych architektur
Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
mips64el	3 406,0 KiB	4 898,0 KiB	[lista plików]