Pakiet: fasttree (2.1.11-2)
Odnośniki dla fasttree
Zasoby systemu Debian:
- Raporty o błędach
- Developer Information
- Dziennik zmian w systemie Debian
- Informacje nt. praw autorskich
- Śledzenie łatek systemu Debian
Pobieranie pakietu źródłowego fasttree:
Opiekunowie:
- Debian Med Packaging Team (Strona QA, Archiwum e-mail)
- Steffen Moeller (Strona QA)
- Thorsten Alteholz (Strona QA)
- Andreas Tille (Strona QA)
- Roland Fehrenbacher (Strona QA)
Zasoby zewnętrzne:
- Strona internetowa [www.microbesonline.org]
Podobne pakiety:
phylogenetic trees from alignments of nucleotide or protein sequences
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.
FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").
This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).
Inne pakiety związane z fasttree
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- dep: libc6 (>= 2.29)
- Biblioteka GNU C: biblioteki współdzielone
również pakiet wirtualny udostępniany przez libc6-udeb
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- dep: libgomp1 (>= 6)
- Biblioteka wspierająca GCC OpenMP (GOMP)
Pobieranie fasttree
| Architektura | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|
| amd64 | 176,6 KiB | 483,0 KiB | [lista plików] |
| arm64 | 167,5 KiB | 465,0 KiB | [lista plików] |
| armel | 172,2 KiB | 509,0 KiB | [lista plików] |
| armhf | 164,9 KiB | 385,0 KiB | [lista plików] |
| i386 | 178,9 KiB | 517,0 KiB | [lista plików] |
| mips64el | 171,5 KiB | 527,0 KiB | [lista plików] |
| mipsel | 171,8 KiB | 515,0 KiB | [lista plików] |
| ppc64el | 181,9 KiB | 635,0 KiB | [lista plików] |
| s390x | 166,4 KiB | 493,0 KiB | [lista plików] |