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[ Pakiet źródłowy: fasttree  ]

Pakiet: fasttree (2.1.11-2)

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phylogenetic trees from alignments of nucleotide or protein sequences

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.

FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").

This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).

Inne pakiety związane z fasttree

  • wymaga
  • poleca
  • sugeruje
  • enhances

Pobieranie fasttree

Pobierz dla wszystkich dostępnych architektur
Architektura Rozmiar pakietu Rozmiar po instalacji Pliki
amd64 176,6 KiB483,0 KiB [lista plików]
arm64 167,5 KiB465,0 KiB [lista plików]
armel 172,2 KiB509,0 KiB [lista plików]
armhf 164,9 KiB385,0 KiB [lista plików]
i386 178,9 KiB517,0 KiB [lista plików]
mips64el 171,5 KiB527,0 KiB [lista plików]
mipsel 171,8 KiB515,0 KiB [lista plików]
ppc64el 181,9 KiB635,0 KiB [lista plików]
s390x 166,4 KiB493,0 KiB [lista plików]