Pakiet: python3-pyfastx (0.8.4-2)

Odnośniki dla python3-pyfastx

Zasoby systemu Debian:

Pobieranie pakietu źródłowego pyfastx:

Opiekunowie:

Zasoby zewnętrzne:

Strona internetowa [github.com]

Podobne pakiety:

fast random access to sequences from FASTA/Q file - python3 module

The pyfastx is a lightweight Python C extension that enables users to randomly access to sequences from plain and gzipped FASTA/Q files. This module aims to provide simple APIs for users to extract sequence from FASTA and reads from FASTQ by identifier and index number. The pyfastx will build indexes stored in a sqlite3 database file for random access to avoid consuming excessive amount of memory. In addition, the pyfastx can parse standard (sequence is spread into multiple lines with same length) and nonstandard (sequence is spread into one or more lines with different length) FASTA format.

It features:

 * a single file for the Python extension;
 * lightweight, memory efficient FASTA/Q file parsing;
 * fast random access to sequences from gzipped FASTA/Q file;
 * sequences reading from FASTA file line by line;
 * N50 and L50 calculation of sequences in FASTA file;
 * GC content and nucleotides composition calculation;
 * reverse, complement and antisense sequences extraction;
 * excellent compatibility: support for parsing nonstandard FASTA file;
 * support for FASTQ quality score conversion;
 * a command line interface for splitting FASTA/Q file.

This package provides the python3 module.

Inne pakiety związane z python3-pyfastx

wymaga

poleca

sugeruje

enhances

dep: libc6 (>= 2.14) [amd64]

Biblioteka GNU C: biblioteki współdzielone
również pakiet wirtualny udostępniany przez libc6-udeb

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.28) [i386]

dep: libc6 (>= 2.7) [mips64el, s390x]
dep: libsqlite3-0 (>= 3.5.9)

Biblioteka współdzielona SQLite 3
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-pyfaidx

efficient random access to fasta subsequences for Python 3
dep: zlib1g (>= 1:1.2.3.4)

Biblioteka kompresyjna - pliki wykonawcze

Pobieranie python3-pyfastx

Pobierz dla wszystkich dostępnych architektur
Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	50,8 KiB	274,0 KiB	[lista plików]
arm64	49,0 KiB	320,0 KiB	[lista plików]
i386	57,1 KiB	290,0 KiB	[lista plików]
mips64el	44,1 KiB	336,0 KiB	[lista plików]
ppc64el	57,0 KiB	448,0 KiB	[lista plików]
s390x	49,0 KiB	280,0 KiB	[lista plików]