Pakiet: mindthegap-examples (2.3.0-2)

Odnośniki dla mindthegap-examples

Zasoby systemu Debian:

Pobieranie pakietu źródłowego mindthegap:

Opiekunowie:

Zasoby zewnętrzne:

Strona internetowa [github.com]

Podobne pakiety:

optional scripts and example resources for mindthegap

Designed to call insertions of any size, whether they are novel or duplicated, homozygous or heterozygous in the donor genome. it takes as input a set of reads and a reference genome. It outputs two sets of FASTA sequences: one is the set of breakpoints of detection insertion sites, the other is the set of assembled insertions for each breakpoint. MindTheGap can also be used as a genome assembly finishing tool. It can fill the gap between a set of input contigs without any a priori on their relative order and orientation. It outputs the results in gfa file. Please note that this package is meant to accommodate the mindthegap package and only acts as example to how this package can be utilised.

Inne pakiety związane z mindthegap-examples

wymaga

poleca

sugeruje

enhances

dep: bsdextrautils

extra utilities from 4.4BSD-Lite

lub bsdmainutils (<< 12.1.1~)

Pakiet przejściowy instalujący więcej narzędzi z FreeBSD
dep: python3

interactive high-level object-oriented language (default python3 version)

rec: mindthegap

performs detection and assembly of DNA insertion variants in NGS read datasets

Pobieranie mindthegap-examples

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