Pakiet: pilon (1.24-2)

Odnośniki dla pilon

Zasoby systemu Debian:

Pobieranie pakietu źródłowego pilon:

Opiekunowie:

Zasoby zewnętrzne:

Strona internetowa [github.com]

Podobne pakiety:

automated genome assembly improvement and variant detection tool

Pilon is a software tool which can be used to:

 * Automatically improve draft assemblies
 * Find variation among strains, including large event detection

Pilon requires as input a FASTA file of the genome along with one or more BAM files of reads aligned to the input FASTA file. Pilon uses read alignment analysis to identify inconsistencies between the input genome and the evidence in the reads. It then attempts to make improvements to the input genome, including:

 * Single base differences
 * Small indels
 * Larger indel or block substitution events
 * Gap filling
 * Identification of local misassemblies, including optional opening
   of new gaps

Inne pakiety związane z pilon

wymaga

poleca

sugeruje

enhances

dep: default-jre

Standard Java or Java compatible Runtime
dep: java-wrappers

Nakładki na pliki wykonywalne Javy
dep: libcommons-lang-java

Commons Lang - an extension of the java.lang package
dep: libhtsjdk-java

Java API for high-throughput sequencing data (HTS) formats
dep: scala-library

Scala standard library

Pobieranie pilon

Pobierz dla wszystkich dostępnych architektur
Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
all	485,4 KiB	613,0 KiB	[lista plików]