[ trixie ]
[ sid ]
[ experimental ]
[ Bron: htslib ]
Pakket: libhts3t64 (1.20+ds-2)
Verwijzigingen voor libhts3t64
Debian bronnen:
Het bronpakket htslib downloaden:
Beheerders:
- Debian Med Packaging Team (QA-pagina, Mailarchief)
- Charles Plessy (QA-pagina)
- Andreas Tille (QA-pagina)
- Michael R. Crusoe (QA-pagina)
- Steffen Moeller (QA-pagina)
- Étienne Mollier (QA-pagina)
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
C library for high-throughput sequencing data formats
HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.
HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.
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