[ Bron: nanolyse ]
Pakket: nanolyse (1.2.0-4)
Verwijzigingen voor nanolyse
Debian bronnen:
Het bronpakket nanolyse downloaden:
Beheerders:
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
remove lambda phage reads from a fastq file
NanoLyse is a tool for rapid removal of contaminant DNA, using the Minimap2 aligner through the mappy Python binding. A typical application would be the removal of the lambda phage control DNA fragment supplied by ONT, for which the reference sequence is included in the package. However, this approach may lead to unwanted loss of reads from regions highly homologous to the lambda phage genome.
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- dep: python3-mappy
- Python3 interface minimap2