Pakket: ngmlr (0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde) [debports]
Verwijzigingen voor ngmlr
Debian bronnen:
Het bronpakket downloaden:
Niet gevondenBeheerders:
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
Experimenteel pakket
Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.
CoNvex Gap-cost alignMents for Long Reads
Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.
Andere aan ngmlr gerelateerde pakketten
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- dep: libc6 (>= 2.34)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support bibliotheek
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- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.1.4)
- compressiebibliotheek - programma's