[ Bron: shasta ]
Pakket: python3-shasta (0.12.0-2 en anderen)
Verwijzigingen voor python3-shasta
Debian bronnen:
Het bronpakket shasta downloaden:
Beheerders:
- Debian Med Packaging Team (QA-pagina, Mailarchief)
- Shayan Doust (QA-pagina)
- Étienne Mollier (QA-pagina)
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
Experimenteel pakket
Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.
nanopore whole genome assembly (dynamic library)
De novo assembly from Oxford Nanopore reads. The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells.
Computational methods used by the Shasta assembler include:
* Using a run-length representation of the read sequence. This makes the assembly process more resilient to errors in homopolymer repeat counts, which are the most common type of errors in Oxford Nanopore reads.
* Using in some phases of the computation a representation of the read sequence based on markers, a fixed subset of short k-mers (k ≈ 10).
Shasta assembly quality is comparable or better than assembly quality achieved by other long read assemblers.
This package contains the dynamic library that can be interfaced and imported within Python.
Andere aan python3-shasta gerelateerde pakketten
|
|
|
|
-
- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- of libblas.so.3
- Pakket niet beschikbaar
-
- dep: libboost-program-options1.83.0 (>= 1.83.0)
- program options library for C++
-
- dep: libboost-serialization1.83.0 (>= 1.83.0)
- serialization library for C++
-
- dep: libc6 (>= 2.38)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
-
- dep: libgcc-s1 (>= 3.4)
- GCC support bibliotheek
-
- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- of liblapack.so.3
- Pakket niet beschikbaar
-
- dep: libpng16-16t64 (>= 1.6.2)
- PNG library - runtime (version 1.6)
-
- dep: libpython3.13 (>= 3.13.0~rc3)
- Shared Python runtime library (version 3.13)
-
- dep: libspoa7.0.0 (>= 4.0.5)
- SIMD partial order alignment library
-
- dep: libstdc++6 (>= 14)
- GNU Standard C++ Library v3
-
- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
-
- dep: python3 (<< 3.14)
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (>= 3.13~)