Pakket: tree-puzzle (5.2-11)

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Homepage [www.tree-puzzle.de]

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Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

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enhances

dep: libc6 (>= 2.17) [arm64]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb

dep: libc6 (>= 2.7) [niet arm64]
dep: libsprng2

SPRNG Scalable Parallel RNG library -- library package

rec: tree-puzzle-doc

Reconstruction of phylogenetic trees by maximum likelihood (doc)

sug: phylip

package of programs for inferring phylogenies
sug: treetool

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Pakket downloaden voor alle beschikbare platforms
Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	132,9 kB	313,0 kB	[overzicht]
arm64	127,1 kB	317,0 kB	[overzicht]
armhf	121,2 kB	241,0 kB	[overzicht]
i386	134,3 kB	333,0 kB	[overzicht]