[ Bron: yanagiba ]
Pakket: yanagiba (1.0.0-2)
Verwijzigingen voor yanagiba
Debian bronnen:
Het bronpakket yanagiba downloaden:
Beheerders:
- Debian Med Packaging Team (QA-pagina, Mailarchief)
- Nilesh Patra (QA-pagina)
- Pranav Ballaney (QA-pagina)
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
filter low quality Oxford Nanopore reads basecalled with Albacore
Yanagiba is used to filter short or low quality Oxford Nanopore reads which have been basecalled with Albacore. It takes fastq.gz and an Albacore summary file as input. If no Albacore summary file is provided attempt to calculate mean qscore from directly from fastq file using NanoMath. Note: Calculated quality scores appear to be lower for reads called with Metrichor, you may need to lower your minqual setting in this case.
Andere aan yanagiba gerelateerde pakketten
|
|
|
|
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-biopython
- Python3 library for bioinformatics
-
- dep: python3-nanomath
- simple math function for other Oxford Nanopore processing scripts
-
- dep: python3-pandas
- data structures for "relational" or "labeled" data