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Pakket: last-align (1179-1 en anderen)

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genome-scale comparison of biological sequences

LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at:

 * Comparing large (e.g. mammalian) genomes.
 * Mapping lots of sequence tags onto a genome.

The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Role: Program

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last-align downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Versie Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 1179-1+b1 1.826,5 kB21.262,0 kB [overzicht]
arm64 1179-1+b1 751,8 kB3.742,0 kB [overzicht]
armel 1179-1+b1 682,4 kB3.778,0 kB [overzicht]
armhf 1179-1+b1 679,5 kB2.910,0 kB [overzicht]
i386 1179-1+b1 3.016,0 kB29.262,0 kB [overzicht]
mips64el 1179-1+b1 798,0 kB4.606,0 kB [overzicht]
mipsel 1179-1+b1 732,3 kB4.556,0 kB [overzicht]
ppc64el 1179-1+b1 843,7 kB4.850,0 kB [overzicht]
s390x 1179-1+b1 775,4 kB4.234,0 kB [overzicht]