Pakket: r-cran-ape (5.4-1-1)

Verwijzigingen voor r-cran-ape

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Het bronpakket r-cran-ape downloaden:

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Homepage [cran.r-project.org]

Vergelijkbare pakketten:

GNU R package for Analyses of Phylogenetics and Evolution

This package provides functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.

Tags: Softwareontwikkeling: Ontwikkelen in GNU R, Field: Statistics, Implemented in: GNU R

Andere aan r-cran-ape gerelateerde pakketten

depends

recommends

suggests

enhances

dep: libc6 (>= 2.29)

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
dep: libgcc-s1 (>= 3.0) [niet armel, armhf]

GCC support bibliotheek

dep: libgcc-s1 (>= 3.5) [armel, armhf]
dep: liblapack3

Library of linear algebra routines 3 - shared version

of liblapack.so.3

virtueel pakket geboden door libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3
dep: r-api-4.0

virtueel pakket geboden door r-base-core
dep: r-base-core (>= 4.0.2-1)

GNU R core of statistical computation and graphics system
dep: r-cran-lattice

GNU R package for 'Trellis' graphics
dep: r-cran-nlme

GNU R package for (non-)linear mixed effects models
dep: r-cran-rcpp (>= 0.12.0)

GNU R package for Seamless R and C++ Integration

sug: clustalw

global multiple nucleotide or peptide sequence alignment
sug: muscle

Multiple alignment program of protein sequences
sug: phyml

Phylogenetic estimation using Maximum Likelihood
sug: r-cran-expm

GNU R Computation of the matrix exponential and related quantities
sug: r-cran-gee

Generalized Estimation Equation Solver
sug: r-cran-igraph

GNU R network analysis and visualization
sug: t-coffee

Multiple Sequence Alignment

r-cran-ape downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	2.156,2 kB	2.509,0 kB	[overzicht]
arm64	2.142,3 kB	2.481,0 kB	[overzicht]
armel	2.140,1 kB	2.478,0 kB	[overzicht]
armhf	2.137,5 kB	2.399,0 kB	[overzicht]
i386	2.157,7 kB	2.503,0 kB	[overzicht]
mips64el	2.145,1 kB	2.528,0 kB	[overzicht]
mipsel	2.146,3 kB	2.514,0 kB	[overzicht]
ppc64el	2.165,8 kB	2.565,0 kB	[overzicht]
s390x	2.150,5 kB	2.529,0 kB	[overzicht]