alle opties
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Bron: fasttree  ]

Pakket: fasttree (2.1.11-2)

Verwijzigingen voor fasttree

Screenshot

Debian bronnen:

Het bronpakket fasttree downloaden:

Beheerders:

Externe bronnen:

Vergelijkbare pakketten:

phylogenetic trees from alignments of nucleotide or protein sequences

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.

FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").

This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).

Andere aan fasttree gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • enhances

fasttree downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
mipsel 171,8 kB515,0 kB [overzicht]