[ Bron: python-pyfaidx ]
Pakket: python3-pyfaidx (0.5.9.2-1)
Verwijzigingen voor python3-pyfaidx
Debian bronnen:
Het bronpakket python-pyfaidx downloaden:
- [python-pyfaidx_0.5.9.2-1.dsc]
- [python-pyfaidx_0.5.9.2.orig.tar.gz]
- [python-pyfaidx_0.5.9.2-1.debian.tar.xz]
Beheerders:
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
efficient random access to fasta subsequences for Python 3
Samtools provides a function "faidx" (FAsta InDeX), which creates a small flat index file ".fai" allowing for fast random access to any subsequence in the indexed FASTA file, while loading a minimal amount of the file in to memory. This Python module implements pure Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index. The pyfaidx module is API compatible with the pygr seqdb module. A command-line script "faidx" is installed alongside the pyfaidx module, and facilitates complex manipulation of FASTA files without any programming knowledge.
This package provides the Python 3 modules to access fasta files.
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