Pakket: t-coffee (13.41.0.28bdc39+dfsg-4)
Verwijzigingen voor t-coffee
Debian bronnen:
Het bronpakket t-coffee downloaden:
- [t-coffee_13.41.0.28bdc39+dfsg-4.dsc]
- [t-coffee_13.41.0.28bdc39+dfsg.orig.tar.xz]
- [t-coffee_13.41.0.28bdc39+dfsg-4.debian.tar.xz]
Beheerders:
- Debian Med Packaging Team (QA-pagina, Mailarchief)
- Steffen Moeller (QA-pagina)
- Andreas Tille (QA-pagina)
Externe bronnen:
- Homepage [www.tcoffee.org]
Vergelijkbare pakketten:
Multiple Sequence Alignment
T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.
T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information
T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.
Andere aan t-coffee gerelateerde pakketten
|
|
|
|
-
- dep: libc6 (>= 2.29)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC support bibliotheek
-
- dep: libstdc++6 (>= 4.1.1)
- GNU Standard C++ Library v3
-
- rec: amap-align
- Protein multiple alignment by sequence annealing
-
- rec: clustalo
- General-purpose multiple sequence alignment program for proteins
-
- rec: clustalw
- global multiple nucleotide or peptide sequence alignment
-
- rec: dialign-tx
- Segment-based multiple sequence alignment
-
- rec: fsa
- Fast Statistical Alignment of protein, RNA or DNA sequences
-
- rec: kalign
- Global and progressive multiple sequence alignment
-
- rec: libsoap-lite-perl
- Perl implementation of a SOAP client and server
-
- rec: libxml-simple-perl
- Perl module for reading and writing XML
-
- rec: mafft
- Multiple alignment program for amino acid or nucleotide sequences
-
- rec: muscle
- Multiple alignment program of protein sequences
-
- rec: mustang
- multiple structural alignment of proteins
-
- rec: ncbi-blast+
- next generation suite of BLAST sequence search tools
-
- rec: poa
- Partial Order Alignment for multiple sequence alignment
-
- rec: prank
- Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
-
- rec: probcons
- PROBabilistic CONSistency-based multiple sequence alignment
-
- rec: proda
- meervoudige groepering van proteïnereeksen
-
- rec: tm-align
- structural alignment of proteins
-
- sug: boxshade
- Pretty-printing of multiple sequence alignments
-
- sug: seaview
- Multiplatform interface for sequence alignment and phylogeny
-
- sug: t-coffee-examples
- annotated examples for the use of T-Coffee