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[ Bron: phybin  ]

Pakket: phybin (0.3-6)

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binning/clustering newick trees by topology

PhyBin is a simple command line tool that classifies a set of Newick tree files by their topology. The purpose of it is to take a large set of tree files and browse through the most common tree topologies.

It can do simple binning of identical trees or more complex clustering based on an all-to-all Robinson-Foulds distance matrix.

phybin produces output files that characterize the size and contents of each bin or cluster (including generating GraphViz-based visual representations of the tree topologies).

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phybin downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 1.614,5 kB11.976,0 kB [overzicht]
arm64 4.125,4 kB30.322,0 kB [overzicht]
armel 4.407,2 kB28.552,0 kB [overzicht]
armhf 4.444,7 kB28.524,0 kB [overzicht]
i386 4.957,4 kB37.630,0 kB [overzicht]
mips64el 5.284,0 kB58.772,0 kB [overzicht]
mipsel 3.528,3 kB40.639,0 kB [overzicht]
ppc64el 3.498,6 kB38.137,0 kB [overzicht]
s390x 7.543,2 kB53.627,0 kB [overzicht]