Pakket: lumpy-sv (0.3.1+dfsg-7)

Verwijzigingen voor lumpy-sv

Debian bronnen:

Het bronpakket lumpy-sv downloaden:

Beheerders:

Externe bronnen:

Homepage [github.com]

Vergelijkbare pakketten:

general probabilistic framework for structural variant discovery

LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.

Andere aan lumpy-sv gerelateerde pakketten

depends

recommends

suggests

enhances

dep: bamkit

tools for common BAM file manipulations
dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

dynamic library for manipulating BAM (genome alignment) files
dep: libc6 (>= 2.34)

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64el]

GCC support bibliotheek

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [i386, mipsel]
dep: libgzstream0 (>= 1.5+dfsg)

provide functionality of zlib C-library in a C++ iostream
dep: libhts3 (>= 1.10)

C library for high-throughput sequencing data formats
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-numpy

Fast array facility to the Python 3 language
dep: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: samblaster

marks duplicates, extracts discordant/split reads
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats

rec: sambamba

tools for working with SAM/BAM data

lumpy-sv downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	190,7 kB	656,0 kB	[overzicht]
arm64	167,2 kB	676,0 kB	[overzicht]
armel	160,7 kB	674,0 kB	[overzicht]
armhf	166,9 kB	546,0 kB	[overzicht]
i386	209,3 kB	706,0 kB	[overzicht]
mips64el	174,2 kB	777,0 kB	[overzicht]
mipsel	182,5 kB	767,0 kB	[overzicht]
ppc64el	191,6 kB	804,0 kB	[overzicht]