Pakket: dnaclust (3-7 en anderen)

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Homepage [dnaclust.sourceforge.net]

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tool for clustering millions of short DNA sequences

dnaclust is a tool for clustering large number of short DNA sequences. The clusters are created in such a way that the "radius" of each clusters is no more than the specified threshold.

The input sequences to be clustered should be in Fasta format. The id of each sequence is based on the first word of the seqeunce in the Fasta format. The first word is the prefix of the header up to the first occurrence of white space characters in the header.

Tags: Biology: Fasta/Pearson, Nucleic Acids, Field: field::biology, field::biology:bioinformatics, Implemented in: C++, Role: role::program, works-with::biological-sequence

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dep: libboost-program-options1.74.0 (>= 1.74.0)

program options library for C++
dep: libc6 (>= 2.29)

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support bibliotheek
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3

dnaclust downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
arm64	3-7+b2	101,6 kB	657,0 kB	[overzicht]