[ Bron: seqtools ]
Pakket: belvu (4.44.1+dfsg-7 en anderen)
Verwijzigingen voor belvu
Debian bronnen:
Het bronpakket seqtools downloaden:
- [seqtools_4.44.1+dfsg-7.dsc]
- [seqtools_4.44.1+dfsg.orig.tar.xz]
- [seqtools_4.44.1+dfsg-7.debian.tar.xz]
Beheerders:
Externe bronnen:
- Homepage [www.sanger.ac.uk]
Vergelijkbare pakketten:
multiple sequence alignment viewer and phylogenetic tool
Belvu is a multiple sequence alignment viewer and phylogenetic tool with an extensive set of user-configurable modes to color residues.
* View multiple sequence alignments.
* Residues can be coloured by conservation, with user-configurable
cutoffs and colours.
* Residues can be coloured by residue type (user-configurable).
* Colour schemes can be imported or exported.
* Swissprot (or PIR) entries can be fetched by double clicking.
* The position in the alignment can be easily tracked.
* Manual deletion of rows and columns.
* Automatic editing of rows and columns based on customisable criteria:
- removal of all-gap columns;
- removal of all gaps;
- removal of redundant sequences;
- removal of a column by a user-specified percentage of gaps;
- filtering of sequences by percent identity;
- removal of sequences by a user-specified percentage of gaps;
- removal of partial sequences (those starting or ending with
gaps); and
- removal of columns by conservation (with user-specified
upper/lower cutoffs).
* The alignment can be saved in Stockholm, Selex, MSF or FASTA format.
* Distance matrices between sequences can be generated using a variety
of distance metrics.
* Distance matrices can be imported or exported.
* Phylogenetic trees can be constructed based on various distance-based
tree reconstruction algorithms.
* Trees can be saved in New Hampshire format.
* Belvu can perform bootstrap phylogenetic reconstruction.
Andere aan belvu gerelateerde pakketten
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- dep: libc6 (>= 2.34)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
-
- dep: libcairo2 (>= 1.2.4)
- Cairo 2D vector graphics library
-
- dep: libcurl4 (>= 7.16.2)
- easy-to-use client-side URL transfer library (OpenSSL flavour)
-
- dep: libgbtools0 (>= 4.44.1+dfsg)
- library for visualising sequence alignments
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- dep: libglib2.0-0 (>= 2.22.0)
- GLib library of C routines
-
- dep: libgtk2.0-0 (>= 2.12.0)
- GTK graphical user interface library - old version
-
- dep: libpango-1.0-0 (>= 1.14.0)
- Layout and rendering of internationalized text
-
- dep: libstdc++6 (>= 4.1.1)
- GNU Standard C++ Library v3