Package: last-align (1179-1 and others)

Links for last-align

Debian Resources:

Download Source Package last-align:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Charles Plessy (QA Page)
Andreas Tille (QA Page)
Nilesh Patra (QA Page)

External Resources:

Homepage [last.cbrc.jp]

Similar packages:

genome-scale comparison of biological sequences

LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at:

 * Comparing large (e.g. mammalian) genomes.
 * Mapping lots of sequence tags onto a genome.

The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Role: Program

Other Packages Related to last-align

depends

recommends

suggests

enhances

dep: libc6 (>= 2.29)

GNU C 라이브러리: 공유 라이브러리
also a virtual package provided by libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC 기능 지원 라이브러리
dep: libstdc++6 (>= 6)

GNU 표준 C++ 라이브러리 v3
dep: zlib1g (>= 1:1.1.4)

압축 라이브러리 - 런타임

rec: parallel

build and execute command lines from standard input in parallel
rec: python3

interactive high-level object-oriented language (default python3 version)
rec: python3-pil

Python Imaging Library (Python3)

Download last-align

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
ppc64el	1179-1+b1	843.7 kB	4,850.0 kB	[list of files]