Package: biobambam2 (2.0.179+ds-1)

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tools for early stage alignment file processing

This package contains some tools for processing BAM files, including

  bamsormadup:  parallel sorting and duplicate marking
  bamcollate2:  reads BAM and writes BAM reordered such that alignment
                or collated by query name
  bammarkduplicates: reads BAM and writes BAM with duplicate alignments
                marked using the BAM flags field
  bammaskflags: reads BAM and writes BAM while masking (removing) bits
                from the flags column
  bamrecompress: reads BAM and writes BAM with a defined compression
                 setting. This tool is capable of multi-threading.
  bamsort:       reads BAM and writes BAM resorted by coordinates or
                 query name
  bamtofastq:    reads BAM and writes FastQ; output can be collated
                 or uncollated by query name

Other Packages Related to biobambam2

depends

recommends

suggests

enhances

dep: libc6 (>= 2.29)

GNU C 라이브러리: 공유 라이브러리
also a virtual package provided by libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC 기능 지원 라이브러리
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) 지원 라이브러리
dep: libmaus2-2 (>= 2.0.768+dfsg)

collection of data structures and algorithms for biobambam
dep: libstdc++6 (>= 9)

GNU 표준 C++ 라이브러리 v3
dep: zlib1g (>= 1:1.1.4)

압축 라이브러리 - 런타임

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