Package: pirs (2.0.2+dfsg-11)
Links for pirs
Debian Resources:
Download Source Package pirs:
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
Profile based Illumina pair-end Reads Simulator
The program pIRS can be used for simulating Illumina PE reads, with a series of characters generated by Illumina sequencing platform, such as insert size distribution, sequencing error(substitution, insertion, deletion), quality score and GC content-coverage bias.
The insert size follows a normal distribution, so users should set the mean value and standard deviation. Usually the standard deviation is set as 1/20 of the mean value. The normal distribution by Box-Muller method is simulated.
The program simulates sequencing error, quality score and GC content- coverage bias according to the empirical distribution profile. Some default profiles counted from lots of real sequencing data are provided.
To simulate reads from diploid genome, users should simulate the diploid genome sequence firstly by setting the ratio of heterozygosis SNP, heterozygosis InDel and structure variation.
Other Packages Related to pirs
|
|
|
|
-
- dep: fonts-liberation
- Times, Arial 및 Courier 처럼 동일 메트릭을 갖는 폰트
-
- dep: gnuplot
- Command-line driven interactive plotting program.
also a virtual package provided by gnuplot-nox, gnuplot-qt, gnuplot-x11
-
- dep: libc6 (>= 2.29)
- GNU C 라이브러리: 공유 라이브러리
also a virtual package provided by libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC 기능 지원 라이브러리
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) 지원 라이브러리
-
- dep: libgzstream0 (>= 1.5+dfsg)
- provide functionality of zlib C-library in a C++ iostream
-
- dep: libstdc++6 (>= 11)
- GNU 표준 C++ 라이브러리 v3
-
- dep: pirs-profiles
- profile basd Illumina pair-end Reads Simulator (profile data)
-
- dep: zlib1g (>= 1:1.2.0.2)
- 압축 라이브러리 - 런타임
Download pirs
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| ppc64el | 117.2 kB | 423.0 kB | [list of files] |