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/usr/bin/pxaa2cdn
/usr/bin/pxbdfit
/usr/bin/pxbdsim
/usr/bin/pxboot
/usr/bin/pxbp
/usr/bin/pxcat
/usr/bin/pxclsq
/usr/bin/pxcltr
/usr/bin/pxcolt
/usr/bin/pxcomp
/usr/bin/pxconsq
/usr/bin/pxcontrates
/usr/bin/pxfqfilt
/usr/bin/pxlog
/usr/bin/pxlssq
/usr/bin/pxlstr
/usr/bin/pxmono
/usr/bin/pxmrca
/usr/bin/pxmrcacut
/usr/bin/pxmrcaname
/usr/bin/pxnj
/usr/bin/pxnw
/usr/bin/pxpoly
/usr/bin/pxrecode
/usr/bin/pxrevcomp
/usr/bin/pxrls
/usr/bin/pxrlt
/usr/bin/pxrmk
/usr/bin/pxrms
/usr/bin/pxrmt
/usr/bin/pxrr
/usr/bin/pxs2fa
/usr/bin/pxs2nex
/usr/bin/pxs2phy
/usr/bin/pxseqgen
/usr/bin/pxssort
/usr/bin/pxsstat
/usr/bin/pxstrec
/usr/bin/pxsw
/usr/bin/pxt2new
/usr/bin/pxt2nex
/usr/bin/pxtcol
/usr/bin/pxtcomb
/usr/bin/pxtgen
/usr/bin/pxtlate
/usr/bin/pxtrt
/usr/bin/pxtscale
/usr/bin/pxupgma
/usr/bin/pxvcf2fa
/usr/share/doc-base/phyx.phyx
/usr/share/doc/phyx/Phyxed_Manual.pdf
/usr/share/doc/phyx/README.test
/usr/share/doc/phyx/changelog.Debian.gz
/usr/share/doc/phyx/copyright
/usr/share/doc/phyx/examples/manuscript_example/test.fa
/usr/share/doc/phyx/examples/manuscript_example/test0.fa
/usr/share/doc/phyx/examples/manuscript_example/test1.fa
/usr/share/doc/phyx/examples/manuscript_example/test2.fa
/usr/share/doc/phyx/examples/manuscript_example/test3.fa
/usr/share/doc/phyx/examples/manuscript_example/test4.fa
/usr/share/doc/phyx/examples/pxaa2cdn_example/ND6_aa.fa
/usr/share/doc/phyx/examples/pxaa2cdn_example/ND6_nuc.fa
/usr/share/doc/phyx/examples/pxbdfit_example/bd.tre
/usr/share/doc/phyx/examples/pxboot_example/Alignment
/usr/share/doc/phyx/examples/pxboot_example/parts
/usr/share/doc/phyx/examples/pxbp_example/Tree.tre
/usr/share/doc/phyx/examples/pxbp_example/bp_output
/usr/share/doc/phyx/examples/pxbpseq_example/Sequences.fa
/usr/share/doc/phyx/examples/pxbpseq_example/out
/usr/share/doc/phyx/examples/pxbpseq_example/ultra_100.tre
/usr/share/doc/phyx/examples/pxcat_example/Concat_Sequence1.fas
/usr/share/doc/phyx/examples/pxcat_example/Concat_Sequence1.phy
/usr/share/doc/phyx/examples/pxcat_example/Concat_Sequence2.fa
/usr/share/doc/phyx/examples/pxcat_example/Concat_Sequence2.phy
/usr/share/doc/phyx/examples/pxclsq_example/Alignment
/usr/share/doc/phyx/examples/pxconsq_example/Alignment
/usr/share/doc/phyx/examples/pxcontrates_example/contrates_file.txt
/usr/share/doc/phyx/examples/pxcontrates_example/contrates_tree.tre
/usr/share/doc/phyx/examples/pxfqfilt_example/fqfilt_test.fastq
/usr/share/doc/phyx/examples/pxlog_example/run1.trees
/usr/share/doc/phyx/examples/pxlog_example/run2.trees
/usr/share/doc/phyx/examples/pxlssq_example/Alignment
/usr/share/doc/phyx/examples/pxlstr_example/Tree.tre
/usr/share/doc/phyx/examples/pxmrca_example/mrca.txt
/usr/share/doc/phyx/examples/pxmrca_example/mrca_test.tre
/usr/share/doc/phyx/examples/pxmrcacut_example/mrca.txt
/usr/share/doc/phyx/examples/pxmrcacut_example/mrca_test.tre
/usr/share/doc/phyx/examples/pxmrcacut_example/out.txt
/usr/share/doc/phyx/examples/pxmrcaname_example/mrca.txt
/usr/share/doc/phyx/examples/pxmrcaname_example/mrca_test.tre
/usr/share/doc/phyx/examples/pxmrcaname_example/named_mrca.txt
/usr/share/doc/phyx/examples/pxnj_example/Alignment.aln
/usr/share/doc/phyx/examples/pxnw_examples/Alignment.aln
/usr/share/doc/phyx/examples/pxrecode_example/Nucleotide.fa
/usr/share/doc/phyx/examples/pxrevcomp_example/Nucleotide.fa
/usr/share/doc/phyx/examples/pxrls_example/newnames.txt
/usr/share/doc/phyx/examples/pxrls_example/oldnames.txt
/usr/share/doc/phyx/examples/pxrls_example/test.fa
/usr/share/doc/phyx/examples/pxrlt_example/kingdoms.newnames.txt
/usr/share/doc/phyx/examples/pxrlt_example/kingdoms.oldnames.txt
/usr/share/doc/phyx/examples/pxrlt_example/kingdoms.tre
/usr/share/doc/phyx/examples/pxrmk_example/knuckle_tree.tre
/usr/share/doc/phyx/examples/pxrms_example/Nucleotide.fa
/usr/share/doc/phyx/examples/pxrms_example/taxa_to_delete.txt
/usr/share/doc/phyx/examples/pxrmt_example/rmt_test.tre
/usr/share/doc/phyx/examples/pxrmt_example/taxa_to_delete.txt
/usr/share/doc/phyx/examples/pxrr_example/out.tre
/usr/share/doc/phyx/examples/pxrr_example/rr_test.tre
/usr/share/doc/phyx/examples/pxs2fa_pxs2phy_pxs2nex_example/Alignment
/usr/share/doc/phyx/examples/pxseqgen_example/goo.fa
/usr/share/doc/phyx/examples/pxseqgen_example/seqgen_test.tre
/usr/share/doc/phyx/examples/pxssort_example/Codon.fa
/usr/share/doc/phyx/examples/pxsstat_example/Bollback_2002_MBE.fa
/usr/share/doc/phyx/examples/pxstrec_example/config_stmap
/usr/share/doc/phyx/examples/pxstrec_example/out
/usr/share/doc/phyx/examples/pxstrec_example/test.data.narrow
/usr/share/doc/phyx/examples/pxstrec_example/test.tre
/usr/share/doc/phyx/examples/pxsw_example/Alignment.fa
/usr/share/doc/phyx/examples/pxt2new_example/Tree.nex
/usr/share/doc/phyx/examples/pxtlate_example/Sequence.fa
/usr/share/doc/phyx/examples/pxtrt_example/taxa_to_retain.txt
/usr/share/doc/phyx/examples/pxtrt_example/yule_100taxa.tre
/usr/share/doc/phyx/examples/pxtscale_example/ultra.tre
/usr/share/doc/phyx/examples/pxupgma_example/drosophila.aln
/usr/share/doc/phyx/examples/pxvcf2fa_example/vcf_file
/usr/share/doc/phyx/run-unit-test.gz
/usr/share/lintian/overrides/phyx
/usr/share/man/man1/pxaa2cdn.1.gz
/usr/share/man/man1/pxbdfit.1.gz
/usr/share/man/man1/pxbdsim.1.gz
/usr/share/man/man1/pxboot.1.gz
/usr/share/man/man1/pxbp.1.gz
/usr/share/man/man1/pxcat.1.gz
/usr/share/man/man1/pxclsq.1.gz
/usr/share/man/man1/pxcltr.1.gz
/usr/share/man/man1/pxcolt.1.gz
/usr/share/man/man1/pxcomp.1.gz
/usr/share/man/man1/pxconsq.1.gz
/usr/share/man/man1/pxcontrates.1.gz
/usr/share/man/man1/pxfqfilt.1.gz
/usr/share/man/man1/pxlog.1.gz
/usr/share/man/man1/pxlssq.1.gz
/usr/share/man/man1/pxlstr.1.gz
/usr/share/man/man1/pxmono.1.gz
/usr/share/man/man1/pxmrca.1.gz
/usr/share/man/man1/pxmrcacut.1.gz
/usr/share/man/man1/pxmrcaname.1.gz
/usr/share/man/man1/pxnj.1.gz
/usr/share/man/man1/pxnw.1.gz
/usr/share/man/man1/pxpoly.1.gz
/usr/share/man/man1/pxrecode.1.gz
/usr/share/man/man1/pxrevcomp.1.gz
/usr/share/man/man1/pxrls.1.gz
/usr/share/man/man1/pxrlt.1.gz
/usr/share/man/man1/pxrmk.1.gz
/usr/share/man/man1/pxrms.1.gz
/usr/share/man/man1/pxrmt.1.gz
/usr/share/man/man1/pxrr.1.gz
/usr/share/man/man1/pxs2fa.1.gz
/usr/share/man/man1/pxs2nex.1.gz
/usr/share/man/man1/pxs2phy.1.gz
/usr/share/man/man1/pxseqgen.1.gz
/usr/share/man/man1/pxssort.1.gz
/usr/share/man/man1/pxsstat.1.gz
/usr/share/man/man1/pxstrec.1.gz
/usr/share/man/man1/pxsw.1.gz
/usr/share/man/man1/pxt2new.1.gz
/usr/share/man/man1/pxt2nex.1.gz
/usr/share/man/man1/pxtcol.1.gz
/usr/share/man/man1/pxtcomb.1.gz
/usr/share/man/man1/pxtgen.1.gz
/usr/share/man/man1/pxtlate.1.gz
/usr/share/man/man1/pxtrt.1.gz
/usr/share/man/man1/pxtscale.1.gz
/usr/share/man/man1/pxupgma.1.gz
/usr/share/man/man1/pxvcf2fa.1.gz