パッケージ: r-bioc-gsva (1.52.3+ds-1 など)
r-bioc-gsva に関するリンク
Debian の資源:
r-bioc-gsva ソースパッケージをダウンロード:
- [r-bioc-gsva_1.52.3+ds-1.dsc]
- [r-bioc-gsva_1.52.3+ds.orig.tar.xz]
- [r-bioc-gsva_1.52.3+ds-1.debian.tar.xz]
メンテナ:
外部の資源:
- ホームページ [bioconductor.org]
類似のパッケージ:
Gene Set Variation Analysis for microarray and RNA-seq data
Gene Set Variation Analysis (GSVA) is a non-parametric, unsupervised method for estimating variation of gene set enrichment through the samples of a expression data set. GSVA performs a change in coordinate systems, transforming the data from a gene by sample matrix to a gene- set by sample matrix, thereby allowing the evaluation of pathway enrichment for each sample. This new matrix of GSVA enrichment scores facilitates applying standard analytical methods like functional enrichment, survival analysis, clustering, CNV-pathway analysis or cross- tissue pathway analysis, in a pathway-centric manner.
その他の r-bioc-gsva 関連パッケージ
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- dep: libc6 (>= 2.16) [x32]
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.2) [hppa]
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.4) [amd64, mips64el, ppc64, s390x, sparc64]
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- dep: libc6.1 (>= 2.3.4) [alpha]
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
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- dep: r-api-4.0
- 以下のパッケージによって提供される仮想パッケージです: r-base-core
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- dep: r-api-bioc-3.16 [x32]
- パッケージは利用できません
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- dep: r-api-bioc-3.18 [hppa, ia64, sh4]
- パッケージは利用できません
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- dep: r-api-bioc-3.19 [hppa, ia64, sh4, x32 以外]
- 以下のパッケージによって提供される仮想パッケージです: r-bioc-biocgenerics
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- dep: r-base-core (>= 4.2.2.20221110-1) [x32]
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-biobase [hppa, ia64, sh4, x32]
- base functions for Bioconductor
- dep: r-bioc-biobase (>= 2.64.0) [hppa, ia64, sh4, x32 以外]
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- dep: r-bioc-biocparallel [hppa, ia64, sh4, x32]
- BioConductor facilities for parallel evaluation
- dep: r-bioc-biocparallel (>= 1.38.0) [hppa, ia64, sh4, x32 以外]
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- dep: r-bioc-biocsingular [hppa, ia64, sh4, x32]
- Singular Value Decomposition for Bioconductor Packages
- dep: r-bioc-biocsingular (>= 1.20.0) [hppa, ia64, sh4, x32 以外]
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- dep: r-bioc-delayedarray [hppa, ia64, sh4, x32]
- BioConductor delayed operations on array-like objects
- dep: r-bioc-delayedarray (>= 0.30.1) [hppa, ia64, sh4, x32 以外]
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- dep: r-bioc-delayedmatrixstats [hppa, ia64, sh4, x32]
- Functions on Rows and Columns of 'DelayedMatrix' Objects
- dep: r-bioc-delayedmatrixstats (>= 1.26.0) [hppa, ia64, sh4, x32 以外]
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- dep: r-bioc-gseabase [hppa, ia64, sh4, x32]
- Gene set enrichment data structures and methods
- dep: r-bioc-gseabase (>= 1.66.0) [hppa, ia64, sh4, x32 以外]
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- dep: r-bioc-hdf5array [hppa, ia64, sh4, x32]
- HDF5 backend for DelayedArray objects
- dep: r-bioc-hdf5array (>= 1.32.0) [hppa, ia64, sh4, x32 以外]
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- dep: r-bioc-iranges [hppa, ia64, sh4, x32]
- GNU R low-level containers for storing sets of integer ranges
- dep: r-bioc-iranges (>= 2.38.1) [hppa, ia64, sh4, x32 以外]
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- dep: r-bioc-s4vectors [hppa, ia64, sh4, x32]
- BioConductor S4 implementation of vectors and lists
- dep: r-bioc-s4vectors (>= 0.42.1) [hppa, ia64, sh4, x32 以外]
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- dep: r-bioc-singlecellexperiment [hppa, ia64, sh4, x32]
- S4 Classes for Single Cell Data
- dep: r-bioc-singlecellexperiment (>= 1.26.0) [hppa, ia64, sh4, x32 以外]
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- dep: r-bioc-sparsematrixstats [hppa, ia64, sh4, x32]
- BioConductor summary statistics for rows and columns of sparse matrices
- dep: r-bioc-sparsematrixstats (>= 1.16.0) [hppa, ia64, sh4, x32 以外]
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- dep: r-bioc-spatialexperiment (>= 1.14.0) [hppa, ia64, sh4, x32 以外]
- S4 Class for Spatially Resolved -omics Data
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- dep: r-bioc-summarizedexperiment [hppa, ia64, sh4, x32]
- BioConductor assay container
- dep: r-bioc-summarizedexperiment (>= 1.34.0) [hppa, ia64, sh4, x32 以外]
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- dep: r-cran-matrix (>= 1.5-0)
- GNU R package of classes for dense and sparse matrices
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- rec: r-cran-fastmatch
- GNU R package for fast match replacement for repeated look-ups
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- rec: r-cran-runit
- GNU R package providing unit testing framework
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- sug: r-bioc-biocgenerics [hppa, ia64, sh4, x32]
- generic functions for Bioconductor
- sug: r-bioc-biocgenerics (>= 0.50.0) [hppa, ia64, sh4, x32 以外]
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- sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]
- standard styles for vignettes and other Bioconductor documents
- sug: r-bioc-biocstyle (>= 2.32.1) [hppa, ia64, sh4, x32 以外]
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- sug: r-bioc-edger [hppa, ia64, sh4, x32]
- Empirical analysis of digital gene expression data in R
- sug: r-bioc-edger (>= 4.2.0) [hppa, ia64, sh4, x32 以外]
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- sug: r-bioc-genefilter [hppa, ia64, sh4, x32]
- methods for filtering genes from microarray experiments
- sug: r-bioc-genefilter (>= 1.86.0) [hppa, ia64, sh4, x32 以外]
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- sug: r-bioc-gsvadata (>= 1.40.0) [hppa, ia64, sh4, x32 以外]
- Data employed in the vignette of the GSVA package
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- sug: r-bioc-limma [hppa, ia64, sh4, x32]
- linear models for microarray data
- sug: r-bioc-limma (>= 3.60.3) [hppa, ia64, sh4, x32 以外]
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- sug: r-bioc-org.hs.eg.db [hppa, ia64, sh4, x32]
- genome-wide annotation for Human
- sug: r-bioc-org.hs.eg.db (>= 3.19.1-1) [hppa, ia64, sh4, x32 以外]
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- sug: r-cran-data.table
- GNU R extension of Data.frame
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- sug: r-cran-future
- R package: A Future API for R
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- sug: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-plotly
- create interactive web graphics via 'plotly.js' in GNU R
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- sug: r-cran-promises
- GNU R abstractions for promise-based asynchronous programming
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- sug: r-cran-rcolorbrewer
- GNU R package providing suitable color palettes
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- sug: r-cran-runit [hppa, ia64, sh4, x32 以外]
- GNU R package providing unit testing framework
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- sug: r-cran-shiny
- GNU R ウェブアプリケーションフレームワーク
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- sug: r-cran-shinydashboard
- GNU R create dashboards with 'Shiny'
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- sug: r-cran-shinyjs
- Easily Improve the User Experience of Your Shiny Apps in Seconds
r-bioc-gsva のダウンロード
アーキテクチャ | バージョン | パッケージサイズ | インストールサイズ | ファイル |
---|---|---|---|---|
alpha (非公式の移植版) | 1.52.3+ds-1 | 1,081.0 kB | 1,366.0 kB | [ファイル一覧] |
amd64 | 1.52.3+ds-1 | 1,080.6 kB | 1,314.0 kB | [ファイル一覧] |
arm64 | 1.52.3+ds-1 | 1,086.2 kB | 1,366.0 kB | [ファイル一覧] |
hppa (非公式の移植版) | 1.50.0+ds-1 | 1,071.2 kB | 1,291.0 kB | [ファイル一覧] |
ia64 (非公式の移植版) | 1.50.0+ds-1 | 1,072.1 kB | 1,298.0 kB | [ファイル一覧] |
mips64el | 1.52.3+ds-1 | 1,088.2 kB | 1,366.0 kB | [ファイル一覧] |
ppc64 (非公式の移植版) | 1.52.3+ds-1 | 1,081.7 kB | 1,366.0 kB | [ファイル一覧] |
ppc64el | 1.52.3+ds-1 | 1,081.5 kB | 1,366.0 kB | [ファイル一覧] |
riscv64 | 1.52.3+ds-1 | 1,088.0 kB | 1,322.0 kB | [ファイル一覧] |
s390x | 1.52.3+ds-1 | 1,080.9 kB | 1,314.0 kB | [ファイル一覧] |
sh4 (非公式の移植版) | 1.50.0+ds-1 | 1,070.9 kB | 1,347.0 kB | [ファイル一覧] |
sparc64 (非公式の移植版) | 1.52.3+ds-1 | 1,080.6 kB | 2,327.0 kB | [ファイル一覧] |
x32 (非公式の移植版) | 1.46.0+ds-1 | 781.0 kB | 911.0 kB | [ファイル一覧] |