[ buster ]
[ ソース: giira ]
パッケージ: giira (0.0.20140625-2)
RNA-Seq driven gene finding incorporating ambiguous reads
GIIRA is a gene prediction method that identifies potential coding regions exclusively based on the mapping of reads from an RNA-Seq experiment. It was foremost designed for prokaryotic gene prediction and is able to resolve genes within the expressed region of an operon. However, it is also applicable to eukaryotes and predicts exon intron structures as well as alternative isoforms.
その他の giira 関連パッケージ
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: glpk-utils
- linear programming kit - utility files
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- dep: libglpk-java
- Java binding to the GNU Linear Programming Kit
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- dep: tophat
- fast splice junction mapper for RNA-Seq reads