[ Source: python-pauvre ]
Package: python3-pauvre (0.2.2-2)
Links for python3-pauvre
Debian Resources:
Download Source Package python-pauvre:
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
QC and genome browser plotting Oxford Nanopore and PacBio long reads
Pauvre is a plotting package designed for nanopore and PacBio long reads.
This package currently hosts four scripts for plotting and/or printing stats.
pauvre marginplot Takes a fastq file as input and outputs a marginal histogram with a heatmap. pauvre stats Takes a fastq file as input and prints out a table of stats, including how many basepairs/reads there are for a length/mean quality cutoff. This is also automagically called when using pauvre marginplot pauvre redwood Method of representing circular genomes. A redwood plot contains long reads as "rings" on the inside, a gene annotation "cambrium/phloem", and a RNAseq "bark". The input is .bam files for the long reads and RNAseq data, and a .gff file for the annotation. pauvre synteny Makes a synteny plot of circular genomes. Finds the most parsimonius rotation to display the synteny of all the input genomes with the fewest crossings-over. Input is one .gff file per circular genome and one directory of gene alignments.
Other Packages Related to python3-pauvre
|
|
|
|
-
- dep: python3
- linguaggio interattivo di alto livello orientato agli oggetti (versione python3 predefinita)
-
- dep: python3-biopython
- libreria Python 3 per bioinformatica
-
- dep: python3-matplotlib
- sistema di tracciamento grafici basato su Python in uno stile simile a Matlab (Python 3)
-
- dep: python3-numpy
- veloce struttura per array per il linguaggio Python 3
-
- dep: python3-pandas
- strutture dati per dati "relazionali" o "etichettati"
-
- dep: python3-scipy
- strumenti scientifici per Python 3
-
- dep: python3-sklearn
- moduli Python per l'apprendimento automatico e il data mining - Python 3
-
- dep: python3-tk
- Tkinter - scrittura di applicazioni Tk con Python 3.x
Download python3-pauvre
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
all | 50.0 kB | 279.0 kB | [list of files] |