Package: med-imaging (3.8.1)

Links for med-imaging

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Debian Med image processing and visualization packages

This metapackage will install Debian packages which might be useful in medical image processing and visualization.

On one hand, it installs several packages supporting various image file formats and image management, like DICOM (Digital Imaging and Communications in Medicine) which is the de-facto standard for medical image management, and NIFTI. On the other hand, it provides a variety of software packages that can be used for visualization and for image processing - either from a graphical user interface, the command line, or implemented in workflows.

Tags: Field: Biology, Medical Imaging, Role: role::metapackage, suite::debian

Other Packages Related to med-imaging

depends

recommends

suggests

enhances

dep: med-config (= 3.8.1)

Debian Med general config package
dep: med-tasks (= 3.8.1)

Debian Med tasks for tasksel

rec: aeskulap

Package not available
rec: amide

software for Medical Imaging
rec: bart

tools for computational magnetic resonance imaging
rec: bart-view

viewer for multi-dimensional complex-valued data
rec: biosig-tools

format conversion tools for biomedical data formats
rec: ctn

Central Test Node, a DICOM implementation for medical imaging
rec: ctsim

Computed tomography simulator
rec: dcm2niix

next generation DICOM to NIfTI converter
rec: dcmtk

OFFIS DICOM toolkit command line utilities
rec: dicom3tools

DICOM medical image files manipulation and conversion tools
rec: dicomnifti

Package not available
rec: dicomscope

OFFIS DICOM Viewer
rec: gdf-tools

IO library for the GDF -- helper tools
rec: gwyddion

Scanning Probe Microscopy visualization and analysis tool
rec: heudiconv

Package not available
rec: imagej

Image processing program with a focus on microscopy images
rec: invesalius

3D medical imaging reconstruction software
rec: ismrmrd-tools

command-line tools for ISMRMRD
rec: king

Package not available
rec: libgdcm-tools

Grassroots DICOM tools and utilities
rec: medcon

Medical Image (DICOM, ECAT, ...) conversion tool
rec: mia-tools

Package not available
rec: mia-viewit

Package not available
rec: mialmpick

Package not available
rec: minc-tools

MNI medical image format tools
rec: mriconvert

Package not available
rec: mricron

magnetic resonance image conversion, viewing and analysis
rec: mrtrix3

diffusion-weighted MRI white matter tractography
rec: nifti-bin

tools shipped with the NIfTI library
rec: odil

C++11 library for the DICOM standard (application)
rec: odin

develop, simulate and run magnetic resonance sequences
rec: openslide-tools

Manipulation and conversion tools for OpenSlide
rec: orthanc

Lightweight, RESTful DICOM server for medical imaging
rec: orthanc-wsi

Whole-slide imaging support for Orthanc (digital pathology)
rec: pixelmed-apps

Package not available
rec: plastimatch

medical image reconstruction and registration
rec: python3-dipy

Python library for the analysis of diffusion MRI datasets
rec: python3-nibabel

Python3 bindings to various neuroimaging data formats
rec: python3-nipy

Package not available
rec: python3-nipype

Package not available
rec: python3-nitime

timeseries analysis for neuroscience data (nitime)
rec: python3-pydicom

DICOM medical file reading and writing (Python 3)
rec: python3-pyxid

interface for Cedrus XID and StimTracker devices
rec: python3-surfer

visualize Freesurfer's data in Python3
rec: sigviewer

GUI viewer for biosignals such as EEG, EMG, and ECG
rec: teem-apps

Tools to process and visualize scientific data and images - command line tools
rec: tifffile

virtual package provided by python3-tifffile
rec: vrrender

virtual package provided by sightviewer
rec: vtk-dicom-tools

Package not available
rec: xmedcon

Medical Image (DICOM, ECAT, ...) conversion tool (GUI)

sug: afni

Package not available
sug: ants

advanced normalization tools for brain and image analysis
sug: bart-cuda

Package not available
sug: bioimagesuite

Package not available
sug: bioimagexd

Package not available
sug: blox

Package not available
sug: brainvisa

Package not available
sug: camitk-imp

workbench application for the CamiTK library
sug: caret

Package not available
sug: cdmedicpacs

Package not available
sug: cellprofiler

Package not available
sug: cmtk

Package not available
sug: connectomeviewer

Package not available
sug: conquest-common

Package not available
sug: conquest-dbase

Package not available
sug: conquest-mysql

Package not available
sug: conquest-postgres

Package not available
sug: conquest-sqlite

Package not available
sug: crea

Package not available
sug: dcm4chee

Package not available
sug: devide

Package not available
sug: dicom4j

Package not available
sug: dicoogle

Package not available
sug: drjekyll

Package not available
sug: dti-query

Package not available
sug: dtitk

Package not available
sug: ecg2png

Package not available
sug: eeglab

Package not available
sug: elastix

toolbox for rigid and nonrigid registration of images
sug: fiji

Package not available
sug: freesurfer

Package not available
sug: fsl

Package not available
sug: fslview

Package not available
sug: gimias

Package not available
sug: ginkgocadx

Package not available
sug: hid

Package not available
sug: illustrate

cartoonish representations of large biological molecules
sug: imagemagick

image manipulation programs -- binaries
also a virtual package provided by graphicsmagick-imagemagick-compat, imagemagick-6.q16
sug: imagevis3d

Package not available
sug: imview

Image viewing and analysis application
sug: incf-nidash-oneclick-clients

Package not available
sug: insightapplications

Package not available
sug: isis

Package not available
sug: itksnap

Package not available
sug: jemris

Package not available
sug: jist

Package not available
sug: kradview

Package not available
sug: libdcm4che-java

Package not available
sug: lipsia

Package not available
sug: maris

Package not available
sug: mayam

Package not available
sug: medisnap

Package not available
sug: mesa-test-tools

Package not available
sug: micromanager

Package not available
sug: mipav

Package not available
sug: miview

Package not available
sug: mni-autoreg

Package not available
sug: mni-colin27-nifti

Package not available
sug: mni-icbm152-nlin-2009

Package not available
sug: mni-n3

Package not available
sug: mrisim

Package not available
sug: omero

Package not available
sug: opendicom.net

Package not available
sug: openelectrophy

Package not available
sug: openmeeg-tools

Package not available
sug: opensourcepacs

Package not available
sug: openwalnut-qt4

Package not available
sug: orthanc-dicomweb

Plugin to extend Orthanc with support of WADO and DICOMweb
sug: orthanc-gdcm

DICOM transcoder/decoder for Orthanc using GDCM (notably for JPEG2k)
sug: orthanc-imagej

ImageJ plugin to import images from Orthanc
sug: orthanc-mysql

Plugins to use MySQL or MariaDB as a database back-end to Orthanc
sug: orthanc-neuro

Neuroimaging plugin for Orthanc
sug: orthanc-postgresql

Plugins to use PostgreSQL as a database back-end to Orthanc
sug: orthanc-webviewer

Web viewer of medical images for Orthanc
sug: paraview

Package not available
sug: piano

Package not available
sug: pngquant

PNG (Portable Network Graphics) image optimising utility
sug: pymeg

Package not available
sug: science-workflow

workflow management systems useful for scientific research
sug: slicer

Package not available
sug: sofa-apps

Package not available
sug: stabilitycalc

Package not available
sug: stir

Package not available
sug: tempo

Package not available
sug: trimage

GUI and command-line interface to optimize image files
sug: via-bin

Package not available
sug: visit

Package not available
sug: vmtk

Package not available
sug: voxbo

Package not available
sug: xnat

Package not available

Download med-imaging

Download for all available architectures
Architecture	Package Size	Installed Size	Files
all	9.7 kB	30.0 kB	[list of files]