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[ Source: lagan  ]

Package: lagan (2.0-10 and others)

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highly parametrizable pairwise global genome sequence aligner

Lagan takes local alignments generated by CHAOS as anchors, and limits the search area of the Needleman-Wunsch algorithm around these anchors.

Multi-LAGAN is a generalization of the pairwise algorithm to multiple sequence alignment. M-LAGAN performs progressive pairwise alignments, guided by a user-specified phylogenetic tree. Alignments are aligned to other alignments using the sum-of-pairs metric.

Other Packages Related to lagan

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  • suggests
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Download lagan

Download for all available architectures
Architecture Version Package Size Installed Size Files
amd64 2.0-10 179.9 kB834.0 kB [list of files]
arm64 2.0-10+b1 173.2 kB1,771.0 kB [list of files]
armel 2.0-10 163.2 kB691.0 kB [list of files]
armhf 2.0-10 162.4 kB583.0 kB [list of files]
i386 2.0-10 186.7 kB831.0 kB [list of files]
mips64el 2.0-10 182.3 kB1,924.0 kB [list of files]
ppc64el 2.0-10 199.0 kB1,898.0 kB [list of files]
riscv64 2.0-10 180.8 kB682.0 kB [list of files]
s390x 2.0-10 186.6 kB802.0 kB [list of files]