Package: bifrost (1.3.1-1 and others)

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Homepage [github.com]

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parallel construction, indexing and querying of de Bruijn graphs

Bifrost is a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.

 * Build, index, color and query the compacted de Bruijn graph
 * No need to build the uncompacted de Bruijn graph
 * Reads or assembled genomes as input
 * Output graph in GFA (can be visualized with Bandage), FASTA or binary
 * Graph cleaning: short tip clipping, etc.
 * Multi-threaded
 * No parameters to estimate with other tools
 * Exact or approximate k-mer search of queries

Other Packages Related to bifrost

depends

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enhances

dep: libbifrost0 (>= 1.3.1)

library for parallel construction, indexing and querying of de Bruijn graphs
dep: libc6 (>= 2.34) [not arm64]

GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.38) [arm64]
dep: libgcc-s1 (>= 3.0) [not riscv64]

GCC támogató programkönyvtár

dep: libgcc-s1 (>= 3.4) [riscv64]
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: zlib1g (>= 1:1.1.4)

tömörítő könyvtár - futásidejű

Download bifrost

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
amd64	1.3.1-1	500.0 kB	1,222.0 kB	[list of files]
arm64	1.3.1-1+b1	486.1 kB	1,175.0 kB	[list of files]
mips64el	1.3.1-1	462.5 kB	1,326.0 kB	[list of files]
ppc64el	1.3.1-1	510.8 kB	1,366.0 kB	[list of files]
riscv64	1.3.1-1	505.7 kB	1,006.0 kB	[list of files]
s390x	1.3.1-1	510.2 kB	1,273.0 kB	[list of files]