Package: t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) [debports]
Links for t-coffee
Debian Resources:
Download Source Package :
Not foundMaintainers:
External Resources:
- Homepage [www.tcoffee.org]
Similar packages:
Multiple Sequence Alignment
T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.
T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information
T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.
Other Packages Related to t-coffee
|
|
|
|
-
- dep: libc6 (>= 2.34)
- GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6-udeb
-
- dep: libgcc-s2 (>= 4.2.1)
- GCC támogató programkönyvtár
-
- dep: libstdc++6 (>= 4.1.1)
- GNU Standard C++ Library v3
-
- rec: amap-align
- Protein multiple alignment by sequence annealing
-
- rec: clustalo
- General-purpose multiple sequence alignment program for proteins
-
- rec: clustalw
- global multiple nucleotide or peptide sequence alignment
-
- rec: dialign-tx
- Segment-based multiple sequence alignment
-
- rec: fsa
- Fast Statistical Alignment of protein, RNA or DNA sequences
-
- rec: kalign
- Global and progressive multiple sequence alignment
-
- rec: libsoap-lite-perl
- Perl implementation of a SOAP client and server
-
- rec: libxml-simple-perl
- Perl module for reading and writing XML
-
- rec: mafft
- Multiple alignment program for amino acid or nucleotide sequences
-
- rec: muscle
- Multiple alignment program of protein sequences
-
- rec: mustang
- multiple structural alignment of proteins
-
- rec: ncbi-blast+
- next generation suite of BLAST sequence search tools
-
- rec: poa
- Partial Order Alignment for multiple sequence alignment
-
- rec: prank
- Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
-
- rec: probcons
- PROBabilistic CONSistency-based multiple sequence alignment
-
- rec: proda
- multiple alignment of protein sequences
-
- rec: tm-align
- structural alignment of proteins
-
- sug: boxshade
- Pretty-printing of multiple sequence alignments
-
- sug: seaview
- Multiplatform interface for sequence alignment and phylogeny
-
- sug: t-coffee-examples
- annotated examples for the use of T-Coffee
Download t-coffee
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| m68k (unofficial port) | 893.9 kB | 2,825.0 kB | [list of files] |