[ Source: tiddit ]
Package: tiddit (2.12.0+dfsg-3 and others)
Links for tiddit
Debian Resources:
Download Source Package tiddit:
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
structural variant calling
TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.
TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.
Other Packages Related to tiddit
|
|
|
|
-
- dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el]
-
- dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386, mipsel]
- GCC támogató programkönyvtár
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386, mipsel]
-
- dep: libstdc++6 (>= 5.2) [armel, armhf]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 9) [not armel, armhf]
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.10)
- dep: python3 (>= 3.9~)
Download tiddit
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| amd64 | 2.12.0+dfsg-3+b1 | 245.1 kB | 1,040.0 kB | [list of files] |
| arm64 | 2.12.0+dfsg-3+b1 | 206.7 kB | 835.0 kB | [list of files] |
| armel | 2.12.0+dfsg-3+b1 | 207.0 kB | 810.0 kB | [list of files] |
| armhf | 2.12.0+dfsg-3+b1 | 213.0 kB | 578.0 kB | [list of files] |
| i386 | 2.12.0+dfsg-3+b1 | 239.5 kB | 1,019.0 kB | [list of files] |
| mips64el | 2.12.0+dfsg-3+b1 | 199.4 kB | 928.0 kB | [list of files] |
| mipsel | 2.12.0+dfsg-3+b1 | 203.4 kB | 888.0 kB | [list of files] |
| ppc64el | 2.12.0+dfsg-3+b1 | 228.0 kB | 1,168.0 kB | [list of files] |
| s390x | 2.12.0+dfsg-3+b1 | 200.7 kB | 951.0 kB | [list of files] |