[ Source: prime-phylo ]
Package: prime-phylo (1.0.11-9 and others)
Links for prime-phylo
Debian Resources:
Download Source Package prime-phylo:
Maintainers:
External Resources:
- Homepage [prime.sbc.su.se]
Similar packages:
bayesian estimation of gene trees taking the species tree into account
PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.
The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.
Other Packages Related to prime-phylo
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- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- or libblas.so.3
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- dep: libboost-mpi1.74.0 (>= 1.74.0)
- C++ interface to the Message Passing Interface (MPI)
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- dep: libboost-serialization1.74.0 (>= 1.74.0)
- serialization library for C++
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- dep: libc6 (>= 2.29)
- GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 4.5)
- GCC támogató programkönyvtár
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- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- or liblapack.so.3
- virtual package provided by libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libopenmpi3 (>= 4.0.5)
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
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- dep: libxml2 (>= 2.7.4)
- GNOME XML könyvtár
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- sug: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- sug: mrbayes
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- sug: muscle
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- sug: njplot
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- sug: phyml
- Phylogenetic estimation using Maximum Likelihood
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- sug: probalign
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- sug: python3-biopython
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- sug: raxml
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- sug: treeviewx
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Download prime-phylo
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| arm64 | 1.0.11-9+b1 | 719.1 kB | 2,938.0 kB | [list of files] |