Paquet : libvcflib-tools (1.0.9+dfsg1-3 et autres)

Liens pour libvcflib-tools

Ressources Debian :

Télécharger le paquet source libvcflib :

Responsables :

Ressources externes :

Page d'accueil [github.com]

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C++ library for parsing and manipulating VCF files (tools)

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

This package contains several tools using the library.

Autres paquets associés à libvcflib-tools

dépendances

recommandations

suggestions

enhances

dep: libc6 (>= 2.38)

bibliothèque C GNU : bibliothèques partagées
un paquet virtuel est également fourni par libc6-udeb
dep: libdisorder0 (>= 0.0.2)

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dep: libfastahack0 (>= 0.0+git20160702.bbc645f)

library for indexing and sequence extraction from FASTA files (lib)
dep: libgcc-s1 (>= 3.3.1)

bibliothèque de prise en charge de GCC
dep: libgomp1 (>= 4.2.1)

bibliothèque GCC pour OpenMP (GOMP)
dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

determine similar regions between two strings or genomic sequences (lib)
dep: libstdc++6 (>= 13.1)

bibliothèque standard C++ de GNU v3
dep: libtabixpp0t64 (>= 1.0.0)

C++ wrapper to tabix indexer
dep: libvcflib2 (>= 1.0.9+dfsg1)

C++ library for parsing and manipulating VCF files
dep: libwfa2-0 (>= 2.3.3)

exact gap-affine algorithm (shared library)
dep: python3

langage orienté objet interactif de haut niveau – version par défaut de Python 3
dep: r-base-core

noyau de GNU R, un système de calculs statistiques et de graphiques
dep: r-cran-ggplot2

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dep: r-cran-gridbase

GNU R Integration of base and grid graphics
dep: r-cran-plyr

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sug: r-cran-pracma

practical numerical math functions for GNU R

Télécharger libvcflib-tools

Télécharger pour toutes les architectures proposées
Architecture	Version	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	1.0.9+dfsg1-3+b2	645,0 ko	3 846,0 ko	[liste des fichiers]