Paquet : trnascan-se (2.0.0-3) [non-free]

Liens pour trnascan-se

Ressources Debian :

Télécharger le paquet source trnascan-se :

Responsables :

Ressources externes :

Page d'accueil [lowelab.ucsc.edu]

Paquets similaires :

detection of transfer RNA genes in genomic sequence

tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while giving less than one false positive per 15 gigabases. Two previously described tRNA detection programs are used as fast, first-pass prefilters to identify candidate tRNAs, which are then analyzed by a highly selective tRNA covariance model. This work represents a practical application of RNA covariance models, which are general, probabilistic secondary structure profiles based on stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s. Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.

Autres paquets associés à trnascan-se

dépendances

recommandations

suggestions

enhances

dep: infernal

inférence d’alignements structurels secondaires d’ARN
dep: libc6 (>= 2.14)

bibliothèque C GNU : bibliothèques partagées
un paquet virtuel est également fourni par libc6-udeb
dep: perl

langage de rapports et d'extractions pratiques de Larry Wall
dep: trnascan-se-common (= 2.0.0-3)

detection of transfer RNA genes in genomic sequence (common files)

Télécharger trnascan-se

Télécharger pour toutes les architectures proposées
Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	146,6 ko	706,0 ko	[liste des fichiers]