Paquet : jellyfish1 (1.1.11-4)

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count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This is the latest version of the 1.x series of jellyfish which is used by some other applications that are not compatible with version 2.x which is provided inside the jellyfish package.

Autres paquets associés à jellyfish1

dépendances

recommandations

suggestions

enhances

dep: libc6 (>= 2.14) [amd64]

bibliothèque C GNU : bibliothèques partagées
un paquet virtuel est également fourni par libc6-udeb

dep: libc6 (>= 2.17) [arm64]

dep: libc6 (>= 2.4) [armhf, i386]
dep: libgcc1 (>= 1:3.0) [amd64, arm64]

bibliothèque de prise en charge de GCC

dep: libgcc1 (>= 1:3.5) [armhf]

dep: libgcc1 (>= 1:4.2) [i386]
dep: libstdc++6 (>= 5.2)

bibliothèque standard C++ de GNU v3

enh: kraken

assigning taxonomic labels to short DNA sequences

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Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	144,6 ko	684,0 ko	[liste des fichiers]
arm64	135,7 ko	635,0 ko	[liste des fichiers]
armhf	135,6 ko	551,0 ko	[liste des fichiers]
i386	161,6 ko	711,0 ko	[liste des fichiers]