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/usr/bin/transit
/usr/bin/transit-tpp
/usr/lib/python3/dist-packages/pytpp/__init__.py
/usr/lib/python3/dist-packages/pytpp/__main__.py
/usr/lib/python3/dist-packages/pytpp/tpp_gui.py
/usr/lib/python3/dist-packages/pytpp/tpp_tools.py
/usr/lib/python3/dist-packages/pytransit/__init__.py
/usr/lib/python3/dist-packages/pytransit/__main__.py
/usr/lib/python3/dist-packages/pytransit/analysis/__init__.py
/usr/lib/python3/dist-packages/pytransit/analysis/anova.py
/usr/lib/python3/dist-packages/pytransit/analysis/base.py
/usr/lib/python3/dist-packages/pytransit/analysis/binomial.py
/usr/lib/python3/dist-packages/pytransit/analysis/corrplot.py
/usr/lib/python3/dist-packages/pytransit/analysis/example.py
/usr/lib/python3/dist-packages/pytransit/analysis/gi.py
/usr/lib/python3/dist-packages/pytransit/analysis/griffin.py
/usr/lib/python3/dist-packages/pytransit/analysis/gumbel.py
/usr/lib/python3/dist-packages/pytransit/analysis/heatmap.py
/usr/lib/python3/dist-packages/pytransit/analysis/hmm.py
/usr/lib/python3/dist-packages/pytransit/analysis/norm.py
/usr/lib/python3/dist-packages/pytransit/analysis/normalize.py
/usr/lib/python3/dist-packages/pytransit/analysis/pathway_enrichment.py
/usr/lib/python3/dist-packages/pytransit/analysis/rankproduct.py
/usr/lib/python3/dist-packages/pytransit/analysis/resampling.py
/usr/lib/python3/dist-packages/pytransit/analysis/tn5gaps.py
/usr/lib/python3/dist-packages/pytransit/analysis/tnseq_stats.py
/usr/lib/python3/dist-packages/pytransit/analysis/utest.py
/usr/lib/python3/dist-packages/pytransit/analysis/zinb.py
/usr/lib/python3/dist-packages/pytransit/convert/__init__.py
/usr/lib/python3/dist-packages/pytransit/convert/base.py
/usr/lib/python3/dist-packages/pytransit/convert/gff_to_prot_table.py
/usr/lib/python3/dist-packages/pytransit/data/COG_roles.dat
/usr/lib/python3/dist-packages/pytransit/data/GO_associated_Rvs-3-11-18.txt
/usr/lib/python3/dist-packages/pytransit/data/GO_associated_Rvs.csv
/usr/lib/python3/dist-packages/pytransit/data/GO_term_names.dat
/usr/lib/python3/dist-packages/pytransit/data/GO_terms_for_each_Rv.obo-3-11-18.txt
/usr/lib/python3/dist-packages/pytransit/data/H37Rv.sanger_associated_RVS.csv
/usr/lib/python3/dist-packages/pytransit/data/H37Rv_COG_roles.dat
/usr/lib/python3/dist-packages/pytransit/data/H37Rv_GO_terms.txt
/usr/lib/python3/dist-packages/pytransit/data/H37Rv_sanger_roles.dat
/usr/lib/python3/dist-packages/pytransit/data/README.md
/usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_merged.wig
/usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_rep1.wig
/usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_rep2.wig
/usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_rep3.wig
/usr/lib/python3/dist-packages/pytransit/data/cholesterol_glycerol_combined.dat
/usr/lib/python3/dist-packages/pytransit/data/gene_ontology.1_2.3-11-18.obo
/usr/lib/python3/dist-packages/pytransit/data/glycerol_H37Rv_merged.wig
/usr/lib/python3/dist-packages/pytransit/data/glycerol_H37Rv_rep1.wig
/usr/lib/python3/dist-packages/pytransit/data/glycerol_H37Rv_rep2.wig
/usr/lib/python3/dist-packages/pytransit/data/samples_metadata_cg.txt
/usr/lib/python3/dist-packages/pytransit/data/samples_metadata_cg_covar.txt
/usr/lib/python3/dist-packages/pytransit/data/samples_metadata_cg_interactions.txt
/usr/lib/python3/dist-packages/pytransit/data/sanger_roles.dat
/usr/lib/python3/dist-packages/pytransit/data/smeg_GO_terms.txt
/usr/lib/python3/dist-packages/pytransit/draw_trash.py
/usr/lib/python3/dist-packages/pytransit/export/__init__.py
/usr/lib/python3/dist-packages/pytransit/export/base.py
/usr/lib/python3/dist-packages/pytransit/export/combined_wig.py
/usr/lib/python3/dist-packages/pytransit/export/igv.py
/usr/lib/python3/dist-packages/pytransit/export/mean_counts.py
/usr/lib/python3/dist-packages/pytransit/export/prot_table.py
/usr/lib/python3/dist-packages/pytransit/fileDisplay.py
/usr/lib/python3/dist-packages/pytransit/genomes/BCG.fna
/usr/lib/python3/dist-packages/pytransit/genomes/BCG.prot_table
/usr/lib/python3/dist-packages/pytransit/genomes/H37Rv.fna
/usr/lib/python3/dist-packages/pytransit/genomes/H37Rv.prot_table
/usr/lib/python3/dist-packages/pytransit/genomes/H37RvBD.fna
/usr/lib/python3/dist-packages/pytransit/genomes/H37RvBD.prot_table
/usr/lib/python3/dist-packages/pytransit/genomes/H37RvBD_mod3.prot_table
/usr/lib/python3/dist-packages/pytransit/genomes/H37RvMA2.fna
/usr/lib/python3/dist-packages/pytransit/genomes/H37RvMA2.prot_table
/usr/lib/python3/dist-packages/pytransit/genomes/genomes.html
/usr/lib/python3/dist-packages/pytransit/genomes/mc2_155_tamu.fna
/usr/lib/python3/dist-packages/pytransit/genomes/mc2_155_tamu.prot_table
/usr/lib/python3/dist-packages/pytransit/images.py
/usr/lib/python3/dist-packages/pytransit/norm_tools.py
/usr/lib/python3/dist-packages/pytransit/qcDisplay.py
/usr/lib/python3/dist-packages/pytransit/stat_tools.py
/usr/lib/python3/dist-packages/pytransit/tnseq_tools.py
/usr/lib/python3/dist-packages/pytransit/transit_gui.py
/usr/lib/python3/dist-packages/pytransit/transit_tools.py
/usr/lib/python3/dist-packages/pytransit/trash.py
/usr/lib/python3/dist-packages/pytransit/view_trash.py
/usr/lib/python3/dist-packages/tnseq_transit-3.2.1.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/tnseq_transit-3.2.1.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/tnseq_transit-3.2.1.egg-info/entry_points.txt
/usr/lib/python3/dist-packages/tnseq_transit-3.2.1.egg-info/requires.txt
/usr/lib/python3/dist-packages/tnseq_transit-3.2.1.egg-info/top_level.txt
/usr/share/doc/tnseq-transit/README.Debian
/usr/share/doc/tnseq-transit/changelog.Debian.gz
/usr/share/doc/tnseq-transit/changelog.gz
/usr/share/doc/tnseq-transit/copyright
/usr/share/man/man1/transit-tpp.1.gz
/usr/share/man/man1/transit.1.gz