Paquet : fastahack (1.0.0+dfsg-7)

Liens pour fastahack

Ressources Debian :

Télécharger le paquet source libfastahack :

Responsables :

Ressources externes :

Page d'accueil [github.com]

Paquets similaires :

utility for indexing and sequence extraction from FASTA files

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

Autres paquets associés à fastahack

dépendances

recommandations

suggestions

enhances

dep: libc6 (>= 2.4)

bibliothèque C GNU : bibliothèques partagées
un paquet virtuel est également fourni par libc6-udeb
dep: libdisorder0 (>= 0.0.2)

library for entropy measurement of byte streams
dep: libfastahack0 (>= 1.0.0+dfsg)

library for indexing and sequence extraction from FASTA files (lib)
dep: libgcc-s1 (>= 3.5)

bibliothèque de prise en charge de GCC
dep: libstdc++6 (>= 5.2)

bibliothèque standard C++ de GNU v3

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Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
armel	11,5 ko	35,0 ko	[liste des fichiers]