[ Source: murasaki ]
Package: murasaki-mpi (1.68.6-15)
Links for murasaki-mpi
Debian Resources:
Download Source Package murasaki:
- [murasaki_1.68.6-15.dsc]
- [murasaki_1.68.6.orig-debian-tests-data.tar.gz]
- [murasaki_1.68.6.orig.tar.gz]
- [murasaki_1.68.6-15.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [murasaki.dna.bio.keio.ac.jp]
Similar packages:
homology detection tool across multiple large genomes (MPI-version)
Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes)) * scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.) * unlimited pattern length * repeat tolerant * intelligent noise reduction
This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.
Other Packages Related to murasaki-mpi
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- dep: libboost-filesystem1.83.0 (>= 1.83.0)
- filesystem operations (portable paths, iteration over directories, etc) in C++
-
- dep: libboost-iostreams1.83.0 (>= 1.83.0)
- Boost.Iostreams Library
-
- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [not armhf, riscv64]
- GCC support library
- dep: libgcc-s1 (>= 3.4) [riscv64]
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libmpich12 [armhf, i386]
- Shared libraries for MPICH
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- dep: libopenmpi40 (>= 5.0.8) [not armhf, i386]
- high performance message passing library -- shared library
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- dep: libstdc++6 (>= 14)
- GNU Standard C++ Library v3
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- dep: murasaki-common
- homology detection tool across multiple large genomes (common files)
Download murasaki-mpi
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 679.2 kB | 4,555.0 kB | [list of files] |
| arm64 | 584.3 kB | 4,455.0 kB | [list of files] |
| armhf | 506.8 kB | 2,766.0 kB | [list of files] |
| i386 | 684.2 kB | 4,247.0 kB | [list of files] |
| ppc64el | 656.2 kB | 5,735.0 kB | [list of files] |
| riscv64 | 630.0 kB | 3,259.0 kB | [list of files] |
| s390x | 649.8 kB | 4,926.0 kB | [list of files] |