Paketti: python3-presto (0.7.2-1)
Links for python3-presto
Debian-palvelut:
Imuroi lähdekoodipaketti presto:
Ylläpitäjät:
External Resources:
- Kotisivu [presto.readthedocs.io]
Samankaltaisia paketteja:
toolkit for processing B and T cell sequences (Python3 module)
pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires.
Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.
This package provides the presto Python3 module.
Muut pakettiin python3-presto liittyvät paketit
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-numpy
- Fast array facility to the Python language (Python 3)
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- dep: python3-packaging
- core utilities for python3 packages
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- dep: python3-pandas
- data structures for "relational" or "labeled" data
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- dep: python3-scipy
- scientific tools for Python 3
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- dep: vsearch [amd64, arm64, ppc64el]
- tool for processing metagenomic sequences
Imuroi python3-presto
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 77.7 kt | 513.0 kt | [tiedostoluettelo] |
| arm64 | 77.7 kt | 513.0 kt | [tiedostoluettelo] |
| armel | 77.7 kt | 513.0 kt | [tiedostoluettelo] |
| armhf | 77.7 kt | 513.0 kt | [tiedostoluettelo] |
| i386 | 77.7 kt | 513.0 kt | [tiedostoluettelo] |
| mips64el | 77.7 kt | 513.0 kt | [tiedostoluettelo] |
| ppc64el | 77.7 kt | 513.0 kt | [tiedostoluettelo] |
| riscv64 | 77.7 kt | 513.0 kt | [tiedostoluettelo] |
| s390x | 77.7 kt | 513.0 kt | [tiedostoluettelo] |