Paketti: libseqlib2 (1.2.0+dfsg-11 ja muut)

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Imuroi lähdekoodipaketti libseqlib:

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Kotisivu [github.com]

Samankaltaisia paketteja:

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

Tagit: Role: Shared Library

Muut pakettiin libseqlib2 liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6 (>= 2.38)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libfml0 (>= 0.1+git20190320.b499514)

library for assembling Illumina short reads in small regions
dep: libgcc-s1 (>= 3.0)

GCC:n apukirjasto
dep: libhts3t64 (>= 1.17)

C library for high-throughput sequencing data formats
dep: libjsoncpp26 (>= 1.9.6)

library for reading and writing JSON for C++
dep: libssw0 (>= 1.1)

fast SIMD parallelized implementation of the Smith-Waterman algorithm
dep: libstdc++6 (>= 13.1)

GNU standardi C++ -kirjasto, versio 3
dep: zlib1g (>= 1:1.1.4)

pakkauskirjaston ajonaikaistiedostot

Imuroi libseqlib2

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
ppc64el	1.2.0+dfsg-11+b2	167.0 kt	597.0 kt	[tiedostoluettelo]