Paketti: clonalframe (1.2-11 ja muut)
Links for clonalframe
Debian-palvelut:
Imuroi lähdekoodipaketti clonalframe:
Ylläpitäjät:
External Resources:
- Kotisivu [www.xavierdidelot.xtreemhost.com]
Samankaltaisia paketteja:
inference of bacterial microevolution using multilocus sequence data
ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homologous recombination events that have disrupted the clonal inheritance.
ClonalFrame can be applied to any kind of sequence data, from a single fragment of DNA to whole genomes. It is well suited for the analysis of MLST data, where 7 gene fragments have been sequenced, but becomes progressively more powerful as the sequenced regions increase in length and number up to whole genomes. However, it requires the sequences to be aligned. If you have genomic data that is not aligned, it is recommend to use Mauve which produces alignment of whole bacterial genomes in exactly the format required for analysis with ClonalFrame.
Muut pakettiin clonalframe liittyvät paketit
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- dep: libc6 (>= 2.38)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC:n apukirjasto
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- dep: libgsl28 (>= 2.8+dfsg)
- GNU Scientific Library (GSL) -- library package
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- dep: libstdc++6 (>= 13.1)
- GNU standardi C++ -kirjasto, versio 3
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- sug: clonalframeml
- Efficient Inference of Recombination in Whole Bacterial Genomes
Imuroi clonalframe
| Arkkitehtuuri | Versio | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|---|
| arm64 | 1.2-11+b3 | 46.9 kt | 151.0 kt | [tiedostoluettelo] |