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[ Source: htslib  ]

Paketti: libhts-dev (1.21+ds-0+exp2)

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development files for the HTSlib

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

This package contains development files for the HTSlib: headers, static library, manual pages, etc.

For compatibility with sambamba, the internal routine cram_to_bam was exported, hereto adopting a patch found in guix.

Tagit: Software Development: C Development, Kirjastot, Implemented in: C, Role: Development Library

Muut pakettiin libhts-dev liittyvät paketit

  • depends
  • recommends
  • suggests
  • enhances
  • dep: libbz2-dev
    high-quality block-sorting file compressor library - development
  • dep: libcurl4-gnutls-dev
    development files and documentation for libcurl (GnuTLS flavour)
  • dep: libdeflate-dev
    headers for whole-buffer compression and decompression library
  • dep: libhts3t64 (= 1.21+ds-0+exp2)
    C library for high-throughput sequencing data formats
  • dep: liblzma-dev
    XZ-format compression library - development files
  • dep: zlib1g-dev
    compression library - development

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