[ Source: r-bioc-genomicranges ]
Paketti: r-bioc-genomicranges (1.34.0+dfsg-1)
Links for r-bioc-genomicranges
Debian-palvelut:
Imuroi lähdekoodipaketti r-bioc-genomicranges:
- [r-bioc-genomicranges_1.34.0+dfsg-1.dsc]
- [r-bioc-genomicranges_1.34.0+dfsg.orig.tar.xz]
- [r-bioc-genomicranges_1.34.0+dfsg-1.debian.tar.xz]
Ylläpitäjät:
External Resources:
- Kotisivu [bioconductor.org]
Samankaltaisia paketteja:
BioConductor representation and manipulation of genomic intervals
The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome.
Muut pakettiin r-bioc-genomicranges liittyvät paketit
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- dep: libc6 (>= 2.4)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: r-api-3.5
- näennäispaketti, jonka toteuttaa r-base-core
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- dep: r-base-core (>= 3.5.1-1)
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-biocgenerics (>= 0.25.3)
- generic functions for Bioconductor
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- dep: r-bioc-genomeinfodb (>= 1.15.2)
- BioConductor utilities for manipulating chromosome identifiers
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- dep: r-bioc-iranges (>= 2.15.12)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-s4vectors (>= 0.19.11)
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-xvector (>= 0.19.8)
- BioConductor representation and manpulation of external sequences
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- rec: r-bioc-annotate
- BioConductor annotation for microarrays
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- rec: r-bioc-summarizedexperiment
- BioConductor assay container
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- rec: r-cran-digest
- GNU R package for 'hash digest' of R data structures
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- rec: r-cran-runit
- GNU R package providing unit testing framework
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- sug: r-bioc-annotationdbi
- GNU R Annotation Database Interface for BioConductor
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- sug: r-bioc-annotationhub
- GNU R client to access AnnotationHub resources
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- sug: r-bioc-biobase
- base functions for Bioconductor
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- sug: r-bioc-biostrings (>= 2.25.3)
- GNU R string objects representing biological sequences
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- sug: r-bioc-bsgenome
- BioConductor infrastructure for Biostrings-based genome data packages
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- sug: r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
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- sug: r-bioc-genomicalignments
- BioConductor representation and manipulation of short genomic alignments
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- sug: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
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- sug: r-bioc-gviz
- Plotting data and annotation information along genomic coordinates
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- sug: r-bioc-rsamtools (>= 1.13.53)
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- sug: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
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- sug: r-bioc-variantannotation
- BioConductor annotation of genetic variants
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-matrix
- GNU R package of classes for dense and sparse matrices
Imuroi r-bioc-genomicranges
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 1,727.9 kt | 2,559.0 kt | [tiedostoluettelo] |