Paketti: cufflinks (2.2.1+dfsg.1-3 ja muut) [non-free]

Links for cufflinks

Debian-palvelut:

Imuroi lähdekoodipaketti cufflinks:

Ylläpitäjät:

External Resources:

Kotisivu [cufflinks.cbcb.umd.edu]

Samankaltaisia paketteja:

Transcript assembly, differential expression and regulation for RNA-Seq

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.

Tagit: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Role: Program, Works with: Biological Sequence

Muut pakettiin cufflinks liittyvät paketit

depends

recommends

suggests

enhances

dep: libboost-serialization1.67.0

serialization library for C++
dep: libboost-system1.67.0

Operating system (e.g. diagnostics support) library
dep: libboost-thread1.67.0

portable C++ multi-threading
dep: libc6 (>= 2.23)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libgcc1 (>= 1:4.0)

GCC:n apukirjasto
dep: libstdc++6 (>= 5.2)

GNU standardi C++ -kirjasto, versio 3
dep: python

interactive high-level object-oriented language (Python2 version)
dep: zlib1g (>= 1:1.2.3.3)

pakkauskirjaston ajonaikaistiedostot

enh: tophat

fast splice junction mapper for RNA-Seq reads

Imuroi cufflinks

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	2.2.1+dfsg.1-3+b1	1,467.3 kt	10,248.0 kt	[tiedostoluettelo]